Table Of ContentUrban River Permits 
Review and Advocacy 
Recommendations for 
the Quinnipiac, Mill, 
and West Rivers
MARY MUSHINSKY for  
Mill River Watershed Association of  
South Central Connecticut and  
River Advocates of  
South Central Connecticut  
April 2014 | Revised June 2015
Publication Designer Edward W. Waters
Project #20130073  
Community Foundation for Greater 
New Haven—Quinnipiac Fund
1
Urban River Permits Review and 
Advocacy Recommendations for 
the Quinnipiac, Mill and West Rivers  
Table of Contents
4 S Executive Summary
Cover Photo:  
Ian Christmann
12 1 The Three Rivers of Greater New Haven
  1.1 Character of Each River  
13  1.2 Human Impacts  
15  1.3 Water Quality and Quantity Issues  
16 1.4 Heavily Developed Urban Watersheds
20 2 The Pollutants: Regulated and Unregulated
  2.1 Phosphorus  
22  2.2 Nitrogen  
24  2.3 Suspended Solids  
  2.4 Bacteria  
2.5 Toxins and New Pollutants
28  3  Permit Categories and Permits of  
the Quinnipiac, Mill, and West Rivers 
  3.1 Wastewater Discharges 
    3.1.1 Industrial Discharge Permits 
      3.1.1.1 Industrial renewable permits 
31      3.1.1.2 Federal Superfund Non-Renewable Permit 
    3.1.2 Municipal Discharge Permits 
      3.1.2.1 POTW’s 
34      3.1.2.2 CSO’s 
36    3.1.3 General Wastewater Permits (GP) 
      3.1.3.1 Water Treatment GP 
      3.1.3.2 Domestic Sewage GP 
      3.1.3.3 Vehicle Maintenance GP 
37    3.1.4 Non-Point Source Pollution: Storm Water Permits 
      3.1.4.1 Reducing Pollution from Non-Point Sources 
38      3.1.4.2 Best Practices 
40      3.1.4.3 Regulating Pollution From Runoff 
      3.1.4.4 Stormwater General Permits 
        3.1.4.4.1 Stormwater GP, Industrial 
41        3.1.4.4.2 Stormwater GP, Commercial 
        3.1.4.4.3 Stormwater GP, Construction 
      3.1.4.4.4 Stormwater GP, Municipal (MS4)
42      3.1.4.5 Cost-Effective Measures 
43      3.1.4.6 Pioneering Municipalities 
  3.2 Water Diversion Permits 
46    3.2.1 Diversions—Renewable 
48    3.2.2 Registrations—Permanent 
49  	 3.2.3	Streamflow	Law	and	Regulations 
50    3.2.4 Improving Diversion Policy
51 3.3 Land Use Permits 
54    3.3.1	Survey	of	Municipal	Land	Use	Practices	 
54  	 3.3.2	Low	Impact	Development	 
56   3.3.3 Improving Municipal Training and Practice
58 4 Advocacy Recommendations 
  4.1 Tactics  
60  4.2 Timetable  
66  4.3 Regulators 
68 4.4 Allies
72  5  Acknowledgments:  
Project Sponsors and Sources
73 A Appendix 
74  A.1   Impaired River Segments  
84  A.2   Proposed Human Health Based and Aquatic  
      Life Criteria for Chemical Constituents  
102  A.3   Industrial Permit Excerpt 
121   A.4   POTW Permit Excerpt 
133  A.5   Waste Water Discharge Permits for South  
      Central Connecticut  
238  A.6   Consumptive Use Diversions 
247  A.7   Registered Diversions  
281  A.8   Municipal Permits Survey Results  
291  A.9   References and Resources 
      References 
292      CT DEEP Guide to Vegetative Buffers  
296  	 	 US	EPA	Soak	Up	The	Rain 
299      Pet Waste Management 
302 A.10   Action Steps
S 
 Urban River Permits Review and 
Advocacy Recommendations for the  
Quinnipiac, Mill and West Rivers  
Executive Summary
1  The Three Rivers   2 The Pollutants: Regulated 
of Greater New Haven and Unregulated
pollutants
The Quinnipiac, Mill and West Rivers are located in  Several   are responsible for the continued 
impaired
Greater New Haven in South Central Connecticut, one   status of the Quinnipiac, West and Mill 
of the densely populated, urbanized regions of the state.   Rivers, in particular, bacteria and excessive nutrients 
three rivers
The   all empty into New Haven Harbor  such as phosphorus and nitrogen.  In some cases, the 
differ in character
and Long Island Sound but   as  specific causes are unknown. Recent data as summa-
a result of how regulators designated their uses more  rized in the Quinnipiac River Watershed Based Plan 
than a century ago.  Officials designated the Quinnip- (2013) identifies the major contributor for each pollut-
iac River as the waste receiving stream for the region,  ant in the Quinnipiac River.
phosphorus
yet all three river are either partly or wholly located on    Excessive   causes nutrient enrich-
impaired waters list 
the federal  due to pollutants  ment.  Enrichment generates algal blooms, noxious 
associated with urban landscapes.  Several types of  blue green algae, reduction in water clarity, depletion of 
human impacts have reduced these rivers’ natural ability  oxygen and fish kills. Most phosphorus in the Quin-
to maintain water quality.  nipiac—75%—arrives from municipal waste water 
water quality quantity
  Both   and   are issues of  treatment plants (POTW’s).  Some municipalities 
concern for river advocates in South Central Connecti- intentionally add phosphorus to public water systems to 
cut.  Poor water quality prevents contact recreation  reduce pipe corrosion.
nitrogen
(swimming and wading). Low water interferes with    Like phosphorus,   is a plant nutrient 
swimming, paddling, fishing and fish life.  which provokes excessive algae growth when present in 
  South Central CT is heavily urbanized, so that  abundance. Fully 74% of nitrogen reaches rivers from 
paved surfaces
extensive   have replaced forests, plants  poor landscape practices.  At present, Wallingford and 
and soil, and reduced the natural filtration and storage  North Haven POTW’s are not meeting nitrogen reduc-
of rain and snow. Much of the Quinnipiac, and down- tion goals.
Suspended solids 
stream sections of the Mill and West River basins are    include silt and clay particles, 
heavily paved today.  Stormwater washing off streets  plankton, algae, fine organic debris, and other partic-
and lots is often contaminated.  ulate matter. Suspended solids can serve as carriers 
  Once a river basin is developed more than 12%,  of toxics, which cling to suspended particles. This is 
water quality degrades.  In South Central Connecticut,  particularly a concern where pesticides are being used 
the lower river basins are paved beyond 25%—a huge  on irrigated crops or when petroleum-derived chem-
challenge for river advocates as they attempt to restore  icals fall onto roads and parking lots. Sources of total 
water quality. solids include industrial discharges, sewage, fertilizers, 
road runoff, and soil erosion. The majority of suspended 
solids reach rivers from poor landscape practices.
4
Bacteria 3.1 Wastewater discharges 
 measured as fecal coliform reaches the 
rivers because of contaminated water running off the 
urban landscape.  Illegal and undetected discharges  Wastewater discharges are regulated by the State 
of raw sewage, golf course ponds and parks with large  and Federal Clean Water Acts. The goal is to reduce 
fishable and swimmable
populations of geese, dog waste, leaking septic tanks  pollution to reach   
and improperly managed agriculture contribute bacteria  conditions and remove rivers and streams from the 
“impaired waters”
which is a threat to public health.  The areas zoned for  federal   list.  The permits are 
NPDES
single family residential land use are responsible for  called  —the National Pollution Discharge 
75% of non-point source fecal coliform bacteria in the  Elimination System.  Wastewater discharge permits 
industrial, municipal, general permits 
urbanized parts of Connecticut.  Management of these  include 
for wastewater,  non-point source permits
sources and restoration of streamside vegetation has  and  , 
stormwa-
been shown to reduce high bacteria counts. including those for managing polluted 
toxics ter approximately 1,212 state-issued 
  Other wastewater discharges, including  ,  .  There are 
waste water discharge permits for the three 
may cause normal stream life to be absent. Some water 
watersheds 
quality experts have suggested that industrial discharge  of South Central Connecticut, of differ-
permits should be updated through the CT DEEP’s  ent permit types (Appendix 5). 
Triennial Review
 process.  Additional requirements 
3.1.1  Industrial Discharges—Renewable 
could include restrictions on other toxic chemicals, 
phthalates NPDES permits  
 and other endocrine disruptors and 
pharmaceuticals  
. Connecticut could also require  Over the last 100 years, industrial dis-
water-borne pesticides
municipal restrictions on  .  charges to the Quinnipiac have declined from 
71 businesses to only six in 2014.  In 2014, 
3  Permit Categories  
there are six industrial discharges to the Quin-
and Permits
nipiac, and no discharges to the Mill or West 
Rivers.  Only three have chemical discharges, 
The water quality and quantity permits of the Quin- and only one is significant.  
three broad 
nipiac, Mill and West Rivers fall into 
categories: 3.1.2  Municipal Discharges 
 
1)  Wastewater discharges  
 regulated by the fed- Municipal discharges include treated 
eral and state Clean Water Acts;  sewage, combined sewer overflows (CSO’s), 
2)  Water diversions
 regulated by the state’s water  stormwater from town garages and runoff 
diversion law and modifications for streamflow law;  from storm drains. 
and 
3)  Land use permits
 at the municipal level.  
5
3.1.2.1  Publicly Owned Treatment Works  3.1.3.5  Domestic Sewage GP  
(POTW, or wastewater treatment 
  This general permit applies to 
plants) 
  discharges of domestic sewage from a 
  Municipalities collect, treat and  community sewerage system (such as 
discharge sewage and other wastewaters  those at condominiums) to a POTW. 
at five Publicly Owned Treatment Works 
3.1.3.6  Vehicle Maintenance  
(POTW’s) and one industrially-owned 
Wastewater GP 
treatment plant along the Quinnipiac.  
West Haven and New Haven operate    Another general permit applies to 
POTW’s which discharge treated effluent  wastewater generated by 1) floor washing 
to New Haven Harbor.  POTW dis- and incidental dripping from vehicles and 
charges are the top source of phosphorus  2) washing of vehicles or steam cleaning 
in waste-receiving streams such as the  of engines.  
Quinnipiac River.  
3.1.7  Non-Point Source Pollution: Stormwa-
3.1.2.2  Combined Sewer Overflows (CSO’s)  ter Permits
  3.1.4.1  Reducing pollution from non-point 
New Haven’s old storm sewer design 
sources 
combines street runoff and sewage, taking 
 
both together to the treatment plant.   As an urbanized region, South 
During rain storms, the capacity of pipes  Central Connecticut is heavily impacted 
is overwhelmed and untreated wastewater  by this pollution type.  Pollution not from 
flows to rivers. CSO separation has begun  a pipe, or “non-point source” pollu-
in New Haven.  CSO generated pollution  tion, reaches South Central CT rivers 
reaches the Quinnipiac, Mill and West  and streams when rain or snow carries 
Rivers and Long Island Sound approxi- contaminants from urban and subur-
mately 50 times per year.  Some activists  ban landscapes to the nearest waterway.  
Non-point source pollution is 
in New Haven are advocating green infra-
responsible for 3 out of 4 pollution 
structure to reduce CSO impacts. 
types that caused South Central 
3.1.3  General Wastewater Permits  CT’s rivers to land on the federal 
General Permits “impaired waters” list.
   (GP) are group-type    Nearly 100% 
permits issued to authorize minor activities by  of bacteria, 99% of suspended solids, 74% 
multiple applicants in the same class.  Gen- of nitrogen and 25% of phosphorus in the 
eral Permits renewal is an opportunity to  Quinnipiac arrive from non-point pollu-
strengthen best practices for all permit holders  tion sources. Examples of these sources are 
in the same class.  septic systems, agricultural waste manage-
ment systems, pet waste, lawn fertilizers 
3.1.4  Water Treatment GP  
and landfills. 
  A general permit regulates discharge of 
total nitrogen from publicly owned treatment 
works (POTW’s). 
6
3.1.4.2  Best Practices to Clean Stormwater  3.1.4.4.2  General Stormwater: Commercial  
include: 
  Commercial activities stormwater 
permits are unique to Connecticut.  They 
1)  Detect and repair illicit 
require operators of large, paved sites (5 
discharges
acres or more) such as malls, theatres and 
2)  Manage pet waste 
supermarkets to sweep parking lots and 
3)  Restore vegetative buffers 
clean catch basins to keep stormwater 
along streams and rivers Approximately 51 commercial 
clean.  
4)  Install green infrastructure permittees 
are in South Central Con-
5)  Frequently clean streets and 
necticut watersheds. 
storm drains 
3.1.4.4.3  General Stormwater: Construction 
3.1.4.3  Regulating Pollution From Runoff   
Construction permits apply to 
Due to regulatory challenges, CT  discharges of stormwater from dewa-
DEEP is concentrating on establish- tering sediment or from development 
ing best practices to reduce pollution. disturbances of one or more acres of land.  
Approximately 109 construction 
3.1.4.4  Stormwater General Permits  permittees
 are in South Central Con-
  CT DEEP regulates non-point  necticut watersheds. 
sources of water pollution through 
stormwater general permits 3.1.4.4.4  Municipal Separate Storm Sewer 
. These 
System (“MS4”) General Permit
are applied to industry, commercial   
businesses, construction sites, and munic-   The Municipal Separate Storm Sewer 
ipalities.  All four of these categories of  System General Permit is more commonly 
stormwater permits affect the rivers of  known by the shorthand “MS4”. Most 
South Central CT.  towns in the South Central Connecti-
  About 1/3 of the state’s 3,219  cut region objected to DEEP’s efforts 
 stormwater state-
entries on the to strengthen MS4 permits, which are 
wide permits 
list of October 15, 2013  designed to reduce polluted water from 
approximately 1,073
( ) are in the water- storm drains.  Facing strong municipal 
sheds of South Central Connecticut.  opposition, permits due to expire on 
January 8, 2015 were instead continued 
3.1.4.4.1  General Stormwater: Industrial  MS4 permit 
to January 8, 2016.  The 
stormwater industrial  affects all 14 municipalities 
  The general  in 
permits
 list includes 1,431 statewide of  the three watersheds of South Central 
approximately 477
which about 1/3 ( )  Connecticut with separate storm sewer 
are in South Central CT.  While many are  systems, identified by the presence of 
industries, these GSI permits also cover  storm drains in the street. If there is no 
municipalities’ public works garages and  resolution of this municipal stormwa-
transfer stations.  ter permit dispute through engineering, 
cost sharing or negotiated timetable for 
7
compliance, water quality in rivers and  joins the West River. The Quinnipiac River 
Long Island Sound will continue to be  tributaries Ten Mile River, Misery Brook and 
impaired.  Broad Brook have permanent registered with-
drawals. 
3.1.4.5  Cost-Effective Measures
      The permitted diversions total 32.284 
  The Center for Watershed Protec- million gallons per day drawn from the Quin-
detecting 
tion in Maryland found that  nipiac basin. Consumptive diversions represent 
and repairing illicit discharges, 
only part of the removal of river water. The 
managing pet waste, and restor-
bulk of water removal is already grandfathered 
ing vegetative buffers produced  registrations
in place as  . 
cleaner water at the most afford-
able cost.   3.2.2  Registrations—Permanent 
 
Under the category of permanent reg-
3.2 Water Diversion Permits
istrations, most of the water resource has 
already been given away in the rivers of South 
Diversion Permits and Registrations
Central Connecticut.  Eleven basins already 
In addition to pollution, rivers are also harmed by  have permanent registrations in the region.  
reduced water quantity. Urban river systems like the  These include the Quinnipiac and its tributary 
Quinnipiac, Mill and West Rivers are heavily tapped to  streams, the Mill River, and West River and 
satisfy competing demands for water.  CT DEEP regu- one of its tributaries. In the rivers of South 
permanent registra-
lates the amount of water that can be removed through  Central Connecticut, 
tions (182) vastly outnumber renewable 
diversion permits.  However, state law exempted water 
diversion permits (21)
diversions that existed as of 1982.   These pre-1982  . 
diversions, mainly by water utilities, were granted    The water authorized to be removed from 
non-expiring status as registered diversions.  Today,  the Quinnipiac basin by permanent registered 
these original registrations can only be modified to  withdrawals at the rate of 116.7 million gallons 
meet requirements of the state’s Streamflow Law of  per day is nearly four times greater than the 
2005, which protects rivers and streams from going  water removed by renewable diversion permit.  
completely dry. The largest registered withdrawals in actual use  
•  Consumptive water diversions
 need a  in the region are those of South Central CT 
permit from CT DEEP and must be renewed Regional Water Authority (SCCRWA) and 
•  Registrations
 are water removals that never  the Wallingford Water Department.   
expire, need no renewal, and don’t come up for 
Streamflow Law and Regulations 
scrutiny unless for streamflow regulations
  Under current law, the Streamflow clas-
3.2.1  Water Diversion Permits—Renewable 
sification process is the only way to modify 
  20 water diversion per-
There are  permanent withdrawal registrations.  The 2005 
mits
 on the Quinnipiac River or its tributary  CT Streamflow law sets up a classification 
streams as of February 2013. There is one  system for rivers and streams, giving more 
diversion permit on Wintergreen Brook, which  protection in low-flow months to certain rivers 
and streams that provide fish, wildlife and 
8
public recreation.  CT DEEP is now consid- municipality to use Low Impact Development.  Key 
ering the classification of rivers and streams of  municipalities (North Haven,Wallingford and South-
South Central CT with their initial draft to be  ington) control the largest percentage of land in the 
released in summer 2015.    Quinnipiac River watershed; how these municipalities 
    regulate land use will determine if water quality will 
Stream Gages 
improve or worsen.  
  Stream gages are a key tool that advocates 
3.3.1  Survey of Municipal Practices  
can use to measure water flows in streams. 
in South Central CT 
There are four United States Geological Ser-
 
vice (USGS) gages located in South Central  We interviewed the municipalities of 
Connecticut and three groundwater observa- South Central CT for this report in 2013 and 
tion wells in the watersheds covered by this  2014, using a questionnaire adapted from a 
report.  statewide 2013 CT DEEP survey.  
    We found towns differ in their use of 
3.2.4  Improving diversion policy 
strategies to reduce water pollution and 
 
Fully one half of the Quinnipiac’s flow in  increase filtration through best practices.  
late summer is treated discharge; more clean  Some municipalities are aggressive in requiring 
water would improve fish habitat and recre- developers to take steps to protect water qual-
ational paddling.  Other states have dealt with  ity and quantity.  Others are limited by lack of 
this problem by creating watershed-specific  staff or staff and board training.  Some towns 
allocations that provide for seasonally import- are skeptical of certain technical recommenda-
ant environmental needs.    tions that are accepted by other communities.  
 
Water allocation planning to address 
3.3.2  Low Impact Development 
competing needs is the responsibility of the 
State’s Water Planning Council, which must    Low Impact Development (LID) is an 
complete their plan by 2018. Advocates should  alternative way of developing land that mini-
participate in both local stream classification  mizes the negative impacts of urbanization on 
and creation of the statewide plan. wildlife habitats and waterways. The design 
more closely imitates the natural world by 
3.3 Land Use Permits
controlling and filtering runoff close to where 
the rain fell, rather than funneling it into pipes 
Another way to reduce water pollution from landscape  and storm sewers that drain into streams and 
sources is through municipal action to grant local land  rivers.  Low impact development for water-
use permits. shed management includes the following best 
  Municipalities of South Central Connecticut have  practices: green roofs, pervious (flow-through) 
the power to dramatically reduce polluted runoff if they  pavement, rain gardens, vegetated streamside 
stop illicit discharges, promote pet waste management  areas, rainwater harvesting, and grassy swales. 
and require land developers to protect and restore    The survey determined that most munic-
streamside vegetation to achieve quick and cost-effec- ipalities in the region were comfortable using 
tive results.  They can also require developers and the  rain gardens, parking islands, buffers, flexible 
9
site design, shared parking and porous pave- on the proposed decision. Twenty five signatures will 
ment. There was some skepticism regarding  trigger a public hearing. Advocates must go on record if 
the long term maintenance of rain gardens.  they object to the proposed decision, and push regula-
Most municipalities in the region were more  tors to add stronger protections for the waterway. 
willing to require LID of new commercial and    General permits with uniform requirements for an 
industrial development than of existing sites.  entire class have replaced individual permits in recent 
decades. General permits are especially difficult for 
3.3.3  Improving Municipal Training and Prac-
river advocacy, as a large and powerful alliance of all the 
tice 
members of the class works together to object to the 
 
We determined through the survey that  permit requirements. A recent example is the unified 
towns needed assistance in their efforts to  opposition of most South Central Connecticut munic-
reduce harmful effects of polluted stormwa- ipalities to the MS4 (municipal stormwater) general 
ter.  Most municipalities selected improving  permit.  On the other hand, strengthening a general 
training for volunteer commissioners and  permit improves water quality for the entire class of 
town staff, and creation of a guide and model  permit holders.
ordinance. Some municipalities also expressed 
Local Land Use Permits
a need for better runoff pollution control on 
state roads over which they have no authority. At the local level, land use permits can be used to 
protect water quality. These permits also involve an 
4 Advocacy  
adversarial process. In a typical public hearing, only 
Recommendations
the immediate neighbors or an economic competitor 
objects to a development that may generate polluted 
Tactics for State Permits Advocacy
runoff. Local land use regulators must decide what 
The federal Clean Water Act is the driving force behind  requirements to put on the developer. Advocates can use 
laws and regulations requiring further cleanup of river  local permit hearings to ask for low impact technolo-
pollution. The regulatory process is an adversarial one.  gies, and regulators are more likely to make them part 
Applicants for state water pollution control permits  of the permit. 
must obtain a permit for their discharge into the waters 
Organizing for Advocacy
of the state. For a diversion, applicants must obtain a 
permit to remove water if the amount is more than  There is a larger constituency for clean water in rivers 
50,000 gallons per day.  and Long Island Sound than there are pollution and 
  The regulatory agency, CT DEEP, determines how  diversion permit holders. More than 200,000 people 
much pollution load or diversion the waterway can  live just in the Quinnipiac Watershed. Advocates have 
withstand, and specifies best practices the polluter or  the advantage in numbers if they organize, time their 
diverter must follow.  The regulator then publishes a  actions according to the permit schedule presented in 
proposed decision, with a deadline for public comments.  this report and become more visible in their advocacy 
 public comment window
  The  is the interval  message at both state and local levels.
during which river advocates must express their views 
10
Description:Greater New Haven in South Central Connecticut, one of the densely .. State's Water Planning Council, which must complete their plan . report identifies the remaining urban river permits for the three . A large tract lies in Hamden. Figure 1-2. control, and pest control on corn, golf courses and tu