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About Namd Tutorial Unix
This document provides a tutorial on using NAMD (Nanoscale Molecular Dynamics) to perform molecular dynamics simulations. It begins with basic concepts like building a protein structure file and solvating a protein in water. It then demonstrates simulations with non-periodic and periodic boundary conditions. Later sections discuss analyzing equilibrium properties, non-equilibrium simulations like heat diffusion, and steered molecular dynamics simulations to study protein unfolding. Appendices provide details on files needed for the simulations. The overall goal is to introduce NAMD capabilities through examples focusing on the ubiquitin protein.
Detailed Information
| Author: | ['ram'] |
|---|---|
| Publication Year: | 2018 |
| Pages: | 118 |
| Language: | English |
| Format: | |
| Price: | FREE |
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