Table Of ContentInfectious Disease
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Ivano de Filippis Marian L. McKee
●
Editors
Molecular Typing in
Bacterial Infections
Editors
Ivano de Filippis Marian L. McKee
Instituto Nacional de Controle de BioReliance Corporation
Qualidade em Saúde Rockville, MD
Fundação Oswaldo Cruz (FIOCRUZ) USA
Rio de Janeiro
Brazil
ISBN 978-1-62703-184-4 ISBN 978-1-62703-185-1 (eBook)
DOI 10.1007/978-1-62703-185-1
Springer NewYork Heidelberg Dordrecht London
Library of Congress Control Number: 2012950050
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Contents
Part I General Consideration on Microorganism Typing Methods
1 Molecular Epidemiology ....................................................................... 3
Amy E. Seitz and D. Rebecca Prevots
Part II Gastrointestinal Pathogens
2 Enterococcus ........................................................................................... 17
Lucia Martins Teixeira and Vânia Lúcia Carreira Merquior
3 Listeria monocytogenes........................................................................... 27
Todd J. Ward
4 Enterobacteriaceae................................................................................. 39
Steven L. Foley, Aaron M. Lynne, and Rajesh Nayak
5 Molecular Typing of Vibrio cholerae: Imprints
in the Epidemiology of Cholera ............................................................ 53
T. Ramamurthy, A.K. Mukhopadhyay, R.K. Nandy,
and G. Balakrish Nair
6 Molecular Typing of Clostridium dif fi cile ............................................. 73
Andrej Weintraub and Carl Erik Nord
7 Oral and Intestinal Bacteroidetes ......................................................... 87
Marina C. Claros and Georg Conrads
Part III Oral and Respiratory Pathogens
8 Streptococci............................................................................................. 109
Lesley McGee and Bernard Beall
v
vi Contents
9 Molecular Typing of Streptococcus mutans ......................................... 127
Kazuhiko Nakano, Ichiro Nakagawa, Satu Alaluusua,
and Takashi Ooshima
10 Genotyping of Periodontal Anaerobic Bacteria
in Relationship to Pathogenesis ............................................................ 149
Masae Kuboniwa and Atsuo Amano
11 Molecular Typing of Nontuberculous Mycobacteria .......................... 167
Jakko van Ingen and Dick van Soolingen
12 Molecular Typing of Neisseria meningitidis ......................................... 179
Muhamed-Kheir Taha and Ala-Eddine Deghmane
13 Molecular Typing in Bacterial Infections Haemophilus spp. ............ 193
Marina Cerquetti
14 Moraxella ................................................................................................ 211
Nevada M. Pingault and Thomas V. Riley
15 Legionella pneumophila Typing ............................................................ 221
Christophe Ginevra
16 Mycoplasma and Ureaplasma ............................................................... 229
Ken B. Waites, Li Xiao, Vanya Paralanov, Rose M. Viscardi,
and John I. Glass
17 Corynebacterium diphtheriae ................................................................. 283
Igor Mokrousov
18 Burkholderia ........................................................................................... 301
Pavel Drevinek and Eshwar Mahenthiralingam
Part IV Urogenital Pathogens
19 Treponema ............................................................................................... 311
Allan Pillay
20 Chlamydiaceae ....................................................................................... 327
Troy Skwor and Deborah Dean
Part V Vector Borne Pathogens
21 Borreliae .................................................................................................. 353
Dionysios Liveris, Klára Hanincová, and Ira Schwartz
22 Erysipelothrix .......................................................................................... 371
Yumiko Imada
Contents vii
Part VI Pathogens Causing Healthcare-Associated Infection
23 Staphylococci .......................................................................................... 385
Jodi A. Lindsay
24 Molecular Typing Methods for the Genus Pseudomonas ................... 407
Balázs Libisch
Part VII Emerging and Re-emerging Pathogens
25 Acinetobacter baumannii ........................................................................ 433
Lenie Dijkshoorn
26 Molecular Typing of Coxiella burnetii: A Review of Available
Methods with Major Focus on PCR-Based Techniques ..................... 457
V. Boldis, E. Spitalska, and R. Toman
Index ................................................................................................................ 471
Contributors
Satu Alaluusua Department of Pediatric and Preventive Dentistry, Institute of
Dentistry , University of Helsinki and Department of Oral and Maxillofacial Diseases ,
Helsinki University Central Hospital , Helsinki, Finland
Atsuo Amano Department of Preventive Dentistry , Osaka University Graduate
School of Dentistry , Suita , Osaka , Japan
Bernard Beall Respiratory Diseases Branch , Division Bacterial Diseases, National
Center for Immunization and Respiratory Diseases, Centers for Disease Control and
Prevention , Atlanta , GA , USA
V. Boldis HPL Medical Laboratories, Bratislava, Slovak Republic
Marina Cerquetti Department of Infectious, Parasitic and Immune-mediated
Diseases , Istituto Superiore di Sanità , Rome , Italy
Marina C. Claros Institute of Medical Microbiology and Infectious Epidemiology
(at time of experiments) , University of Leipzig , Leipzig , Germany
Georg Conrads Division of Oral Microbiology and Immunology, Department of
Operative and Preventive Dentistry & Periodontology , RWTH Aachen University
Hospital , Aachen , Germany
Department of Medical Microbiology , RWTH Aachen University Hospital , Aachen ,
Germany
Deborah Dean Children’s Hospital Oakland Research Institute , Oakland , CA ,
USA
University of California at San Francisco School of Medicine , San Francisco , CA ,
USA
University of California at Berkeley , Berkeley , CA , USA
ix
x Contributors
Ala-Eddine Deghmane Unit of Invasive Bacterial Infection and National
Reference Centre for Meningococci, Institut Pasteur, Paris, France
Lenie Dijkshoorn Department of Infectious Diseases C5-P , Leiden University
Medical Center , Leiden , The Netherlands
Pavel Drevinek Department of Medical Microbiology and Department of
Pediatrics , 2nd Faculty of Medicine , Charles University , Prague, Czech Republic
Steven L. Foley Division of Microbiology , National Center for Toxicological
Research, U.S. Food and Drug Administration , Jefferson , AR , USA
Christophe Ginevra Laboratoire pathogénie bactérienne et immunité innée,
Université Lyon 1, Faculté de médecine Lyon est , INSERM U851, Centre national
de référence des légionelles , Hospices civils de Lyon , Lyon, France
John I. Glass J. Craig Venter Institute , Rockville , MD , USA
Klára Hanincová Department of Microbiology and Immunology , New York
Medical College , Valhalla , NY , USA
Yumiko Imada Center for Animal Disease Control and Prevention, National
Institute of Animal Health , Tsukuba , Ibaraki , Japan
Jakko van Ingen Department of Clinical Microbiology , Radboud University
Nijmegen Medical Center , Nijmegen , The Netherlands
Masae Kuboniwa Department of Preventive Dentistry , Osaka University Graduate
School of Dentistry , Suita , Osaka , Japan
Balázs Libisch Laboratory of Microbiology , Research Institute for Soil Science
of the Hungarian Academy of Sciences , Budapest , Hungary
Jodi A. Lindsay Infection and Immunity , Division of Clinical Sciences , St George’s,
University of London, London , UK
Dionysios Liveris Department of Microbiology and Immunology , New York
Medical College , Valhalla , NY , USA
Aaron M. Lynne Department of Biological Sciences , Sam Houston State
University , Huntsville , TX , USA
Eshwar Mahenthiralingam Cardiff School of Bioscience, Cardiff University ,
Cardiff , UK
Lesley McGee Respiratory Diseases Branch, Division Bacterial Diseases, National
Center for Immunization and Respiratory Diseases, Centers for Disease Control and
Prevention , Atlanta , GA , USA
Vânia Lúcia Carreira Merquior Departamento Microbiologia, Imunologia e
Parasitologia , Universidade do Estado do Rio de Janeiro , Rio de Janeiro , RJ , Brazil
