High Performance Computing for Computational Science – VECPAR 2018: 13th International Conference, São Pedro, Brazil, September 17-19, 2018, Revised Selected Papers

272 Pages·2019·19.271 MB·English

by  Hermes Senger, Osni Marques, Rogerio Garcia, Tatiana Pinheiro de Brito, Rogério Iope, Silvio Stanzani, Veronica Gil-Costa

Hermes Senger · Osni Marques ·
Rogerio Garcia · Tatiana Pinheiro de Brito ·
Rogério Iope · Silvio Stanzani ·
Veronica Gil-Costa (Eds.)
3
3 High Performance Computing
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1 for Computational Science –

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VECPAR 2018
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13th International Conference
São Pedro, Brazil, September 17–19, 2018
Revised Selected Papers
123
Lecture Notes in Computer Science 11333
Commenced Publication in 1973
Founding and Former Series Editors:
Gerhard Goos, Juris Hartmanis, and Jan van Leeuwen
Editorial Board Members
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Lancaster University, Lancaster, UK
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Carnegie Mellon University, Pittsburgh, PA, USA
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University of Surrey, Guildford, UK
Jon M. Kleinberg
Cornell University, Ithaca, NY, USA
Friedemann Mattern
ETH Zurich, Zurich, Switzerland
John C. Mitchell
Stanford University, Stanford, CA, USA
Moni Naor
Weizmann Institute of Science, Rehovot, Israel
C. Pandu Rangan
Indian Institute of Technology Madras, Chennai, India
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TU Dortmund University, Dortmund, Germany
Demetri Terzopoulos
University of California, Los Angeles, CA, USA
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University of California, Berkeley, CA, USA
More information about this series at http://www.springer.com/series/7407
Hermes Senger Osni Marques
(cid:129) (cid:129)
Rogerio Garcia Tatiana Pinheiro de Brito
(cid:129) (cid:129)
é
Rog rio Iope Silvio Stanzani
(cid:129) (cid:129)
Veronica Gil-Costa (Eds.)
High Performance Computing
–
for Computational Science
VECPAR 2018
13th International Conference
ã –
S o Pedro, Brazil, September 17 19, 2018
Revised Selected Papers
123
Editors
Hermes Senger OsniMarques
Federal University of São Carlos Lawrence BerkeleyNational Laboratory
São Carlos, São Paulo, Brazil Berkeley, CA, USA
RogerioGarcia Tatiana Pinheiro deBrito
Universidade EstadualPaulista Júlio Universidade EstadualPaulista Júlio
deMesquita Filho deMesquita Filho
Presidente Prudente, São Paulo,Brazil São Paulo, São Paulo, Brazil
RogérioIope Silvio Stanzani
Universidade EstadualPaulista Júlio Universidade EstadualPaulista Júlio
deMesquita Filho deMesquita Filho
São Paulo, São Paulo, Brazil São Paulo, São Paulo, Brazil
Veronica Gil-Costa
Universidad NacionaldeSan Luis
SanLuis, Argentina
ISSN 0302-9743 ISSN 1611-3349 (electronic)
Lecture Notesin Computer Science
ISBN 978-3-030-15995-5 ISBN978-3-030-15996-2 (eBook)
https://doi.org/10.1007/978-3-030-15996-2
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Preface
The International Meeting on High-Performance Computing for Computational
Science (VECPAR) is a biannual conference and a major venue for the presentation
and discussion of the latest research and practice in high-end computer modeling and
complex systems. The audience and participants of VECPAR are researchers and
students in academic departments, government laboratories, and industrial organiza-
tions. There is a permanent website for the conference series at http://vecpar.fe.up.pt,
maintained by the Faculty of Engineering of the University of Porto.
The13theditionofVECPARwasorganizedinSãoPedro,Brazil,duringSeptember
17–19, 2018. Previous editions of VECPAR were held in Porto (Portugal, 2016),
Oregon (USA, 2014), Kobe (Japan, 2012), Berkeley (USA, 2010), Toulose (France,
2008), Rio de Janeiro (Brazil, 2006), Valencia (Spain, 2004), and Porto (Portugal,
2002, 2000, 1998, 1996 and 1993).
ThiseditionofVECPARhadaveryexcitingprogramwith17fullpapersaccepted,
one short paper, and two posters, contributed by authors from 15 different countries.
The acceptance rate was 53%, repeating the pattern of previous editions.
We had a varied selection of papers, with major themes covering heterogeneous
systems, shared memory systems and GPUs, and techniques including domain
decomposition, scheduling and load balancing, with a strong focus on computational
science applications.
To enrich the conference, we had five keynote presentations:
(cid:129) Gabriel Wainer (Carleton University), “Simulation Everywhere”
(cid:129) RichardVuduc(GeorgiaInstituteofTechnology),“AnAlgorithm,aDataStructure,
and a Machine That All (Try to) Move or Store Fewer Bits”
(cid:129) Kentaro Sano (R-CCS, RIKEN), “FPGA-Based Data-Flow Computing for
High-Performance Numerical Simulation”
(cid:129) Tal Ben-Num (ETH Zurich), “Demystifying Parallel and Distributed Deep
Learning”
(cid:129) Gerard Gorman (Imperial College), “Code Generation for Finite Difference and
Data Inversion – Where Angles Fear to Thread”
VECPAR 2018 also held a panel discussion focused on the convergence of HPC
and AI in the context of science and industry. The invited panelists were: Dr. Pedro
Cruz (NVIDIA, Brazil), Dra. Carla Oshtoff (LNCC, Brazil), Dr. Edson Borin
(Unicamp, Brazil), Dr. Eduardo Michelis (LNLS, Brazil), and Dr. Gerard Gorman
(ImperialCollege,UK).ThepanelwasmoderatedbyDr.OsniMarques(LBNL,USA).
Thesocialprogramoftheconferenceincludedawelcomereceptionpartywithlocal
specialtiesintheeveningofthefirstday,andafantasticgaladinnerwithlivemusicat
the end of the second day.
The most significant contributions to VECPAR 2018 are made available in the
present book, edited after the conference and after a second review of all accepted
vi Preface
papers that werepresented. Thepapersubmission and selection weremanagedviathe
EasyChair conference management system.
The success of the VECPAR conference and its long life are a result of the
collaboration of many people. In particular, for their contribution to the present book,
we would like to thank all the authors for their work and for meeting the tight
deadlines, and all members of the Scientific Committee for their commitment and
invaluable contribution in the selection of papers.
January 2019 Hermes Senger
Osni Marques
Rogerio Garcia
Tatiana Pinheiro
Rogério Iope
Silvio Stanzani
Veronica Gil-Costa
Organization
VECPAR2018,the13theditionoftheVECPARseriesofconferences,wasorganized
by Universidade Estadual Paulista Júlio de Mesquita Filho, UNESP (Brazil),
Universidade Federal de São Carlos, UFSCar (Brazil), Universidade do Porto
(Portugal), and Universidad Nacional de San Luis (Argentina).
Executive Committee
Hermes Senger Federal University of São Carlos, Brazil
Inês Dutra University of Porto, Portugal
Osni Marques LBL, USA
Rogerio Garcia UNESP, Brazil
Tatiana Pinheiro UNESP, Brazil
Rogério Iope UNESP, Brazil
Silvio Stanzani UNESP, Brazil
Veronica Gil-Costa UNSL, Argentina
Steering Committee
Osni Marques (Chair) Lawrence Berkeley National Laboratory, USA
Alvaro Coutinho COPPE/UFRJ, Brazil
Michel Daydé ENSEEIHT, France
Jack Dongarra University of Tennessee, USA
Inês Dutra University of Porto, Portugal
Kengo Nakajima University of Tokyo, Japan
Sameer Shende University of Oregon, USA
Scientific Committee
A. Augusto Sousa, Portugal Antonio J.Tomeu-Hardasmal, Spain
Abdelkader Hameurlain, France Calebe Bianchini, Brazil
Akihiro Ida, Japan Carla Osthoff Barros, Brazil
Akihiro Fujii, Japan Carlos Alvarez, Colombia
Alberto Proenca, Portugal Claudio Amorim, Brazil
Aleardo Manacero, Brazil Claudio Geyer, Brazil
Alex Breuer, USA Cristina Boeres, Brazil
Alexandre Sena, Brazil Daniel Cordeiro, Brazil
Alexey Lastovetsky. Ireland Daniel Kressner, Switzerland
Alfredo Goldman, Brazil Doallo Ramón, Spain
Alonso Inostrosa Psijas, Chile Dolores Rexachs, Spain
Alvaro Coutinho, Brazil Edson Borin, Brazil
viii Organization
Emilio Francesquini, Brazil Paulo Vasconcelos, Portugal
Erika Rosas, Chile Paulo Lopes De Souza, Brazil
Felipe M. G. França, Brazil Pedro Ribeiro, Portugal
Fernando Silva, Portugal Pedro Medeiros, Portugal
Filipe Araujo, Portugal Piotr Luszczek, USA
Francisco F. Rivera, Spain R. Marcelo Naiouf, Argentina
Frederic Suter, France Raffaele Perego, Italy
Gerard Gorman, UK Reiji Suda, Japan
Helio Guardia, Brazil Ricardo Rocha, Portugal
Hervé Paulino, Portugal Rizos Sakellariou, UK
Jakub Kurzak, USA Rodolfo Azevedo, Brazil
João Cardoso, Portugal Rogerio Garcia, Brazil
Jorge G. Barbosa, Portugal Rubén Apolloni, Argentina
Jorge González-Domínguez, Spain Rui Camacho, Portugal
Juan Mallarino, Colombia Rui Ralha, Portugal
Keita Teranishi, USA Sameer Shende, USA
Kengo Nakajima, Japan Samuel Xavier de Souza, Brazil
Kenji Ono, Japan Satoshi Ohshima, Japan
Leandro A. J. Marzulo, Brazil Stéphane Lanteri, France
Leonel Sousa, Portugal Takahiro Katagiri, Japan
Lígia Ribeiro, Portugal Takeshi Iwashita, Japan
Lucia Catabriga, Brazil Tetsuya Sakurai, Japan
Lúcia Drummond, Brazil Tomas Margalef, Spain
Luís Veiga, Portugal Toshiyuki Imamura, Japan
Marcelo Mendoza, Chile Vinod Rebello, Brazil
Marco Netto, Brazil Wei Wu, USA
Masatoshi Kawai, Japan Weichung Wang, Taiwan
Miroslav Tuma, Czech Xavier Vasseur, France
Paolo Romano, Portugal Xing Cai, Norway
Paul Lin, USA
Organization ix
Sponsoring Institutions
The São Paulo Funding Agency - FAPESP
Springer International Publishing
Huawei do Brasil Telecomunicações and Vivo Open Cloud
Hewlett Packard Enterprise and Intel Semicondutores do Brasil
Agência UNESP de Inovação and Santander Universidades
Research Centre for Gas Innovation, The University of São Paulo (USP)
Platinum Sponsors
Gold Sponsors
Bronze Sponsor
Funding Agency
Supporters