Genomics of Disease

231 Pages·2008·56.676 MB·English

by  Lionel Navarro, Rajendra Bari, Alexandre Seilaniantz, Adnane Nemri (auth.), J.P. Gustafson, J. Taylor, G. Stacey (eds.)

Genomics of Disease
J.P. Gustafson, J. Taylor, and G. Stacey
Editors
Genomics of Disease
Editors
J.P.Gustafson J.Taylor
USDA-ARS UniversityofMissouri
UniversityofMissouri DivisionAnimalSciences
DepartmentofAgronomy Columbia,MO65211
205CurtisHall USA
ColumbiaMO65211 [email protected]
USA
[email protected]
G.Stacey
UniversityofMissouri
PlantSciencesUnit
Columbia,MO65211
USA
[email protected]
ISBN:978-0-387-76722-2 e-ISBN:978-0-387-76723-9
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(cid:2)c 2008SpringerScience+BusinessMedia,LLC
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To Dr. Gordon Kimber in recognition of his effort, support, and commitment to
continuationoftheStadlerGeneticsSymposiumovermanyyears.Gordonhasbeen
the strongest supporter of the Stadler Genetics Symposium since he co-organized
theveryfirstonewithDr.GeorgeRe´deiinMay1969.Hecontinuedorganizingand
editingthe Symposiumseriesforseveralyearsandhasalwaysbeentireless in his
attendanceandwillingnesstohelpinidentifyingexcellenttopicsandspeakers.
Acknowledgments
TheeditorsgratefullyacknowledgethegeneroussupportoftheUSDA-ARSandthe
followingunits fromthe Universityof Missouri:the College of Agriculture,Food
and Natural Resources; the Molecular Biology Program; the Office of Research;
theInterdisciplinaryPlantGroup;theCollege ofArtsandSciences;the Schoolof
VeterinaryMedicine;thePlantSciencesUnit;andtheSchoolofMedicine.National
Research Initiative Grant No. 2006-35205-17455 from the USDA Cooperative
State Research, Education,and ExtensionService also supportedthe Symposium.
Thecontributors’continuedsupportmadethe24thStadlerGeneticsSymposiuma
success.
The speakers, who spent a tremendousamount of time preparing their presen-
tations and manuscripts, are gratefullyacknowledged.Withouttheir expertise and
dedication,theSymposiumcouldnothavetakenplace.
Wewishtothankallofthelocalchairpersonsforensuringthatallofthespeakers
werewelltakencareofduringtheSymposium.
Sandi Strother from Conferences and Specialized Courses, University of
Missouri, who tirelessly handled all of our requirements and made sure that
everything was well organized, excellently handled the behind-the-scenes and
on-sitepreparations.Withouther,noneofthiswouldhavebeenpossible
AveryspecialthanksgoestoArturoGarcia,USDA-ARS,Columbia,Missouri,
for all of his excellentsuggestionsin editing the figures and the text to fit a book
format.
vii
Contents
Roles of Plant Hormones in Plant Resistance
andSusceptibilitytoPathogens ...................................... 1
LionelNavarro,RajendraBari, AlexandreSeilaniantz,AdnaneNemri,
andJonathanD.G.Jones
CanineGeneticsFacilitatesUnderstandingofHumanBiology........... 11
ElaineA.Ostrander,HeidiG.Parker,andNathanB.Sutter
Xanthomonas oryzae pv. oryzae AvrXA21 Activity Is Dependent
onaTypeOneSecretionSystem,IsRegulatedbyaTwo-Component
Regulatory System that Responds to Cell Population Density,
andIsConservedinOtherXanthomonasspp........................... 25
Sang-WonLee,Sang-WookHan,LauraE.Bartley,andPamelaC.Ronald
Unraveling the Genetic Mysteries of the Cat: New Discoveries
inFeline-InheritedDiseasesandTraits................................ 41
LeslieA.Lyons
Variation in Chicken Gene Structure and Expression Associated
with Food-Safety Pathogen Resistance: Integrated Approaches
toSalmonellaResistance ............................................ 57
S.J.Lamont
FunctionalGenomicsandBioinformaticsofthePhytophthorasojae
SoybeanInteraction ................................................ 67
Brett M. Tyler, Rays H.Y. Jiang, Lecong Zhou, Sucheta Tripathy,
DaolongDou, Trudy Torto-Alalibo,Hua Li, YongcaiMao, Bing Liu,
MiguelVega-Sanchez,SantiagoX.Mideros,ReginaHanlon,BrianM.Smith,
KonstantinosKrampis,KeyingYe,StevenSt.Martin,AnneE.Dorrance,
InaHoeschele,andM.A.SaghaiMaroof
ix
x Contents
CanineSINEsandTheirEffectsonPhenotypesoftheDomesticDog ..... 79
LeighAnneClark,JacquelynM.Wahl,ChristineA.Rees,GeorgeM.Strain,
EdwardJ.Cargill,SharonL.Vanderlip,andKeithE.Murphy
OvineDiseaseResistance:IntegratingComparativeandFunctional
GenomicsApproachesinaGenomeInformation-PoorSpecies........... 89
H.W. Raadsma, K.J. Fullard, N.M. Kingsford, E.T. Margawati,
E. Estuningsih,S. Widjayanti, Subandriyo,N. Clairoux,T.W. Spithill,
andD.Piedrafita
Integrating Genomics to Understand the Marek’s Disease
Virus–ChickenHost–PathogenInteraction ...........................115
HansH.Cheng
Combining Genomic Tools to Dissect Multifactorial Virulence
inPseudomonasaeruginosa..........................................127
Daniel G. Lee, Jonathan M. Urbach, Gang Wu, Nicole T. Liberati,
RhondaL.Feinbaum,andFrederickM.Ausubel
Genetic Dissection of the InteractionBetween the Plant Pathogen
Xanthomonascampestrispv.vesicatoriaandItsHostPlants..............151
Ulla Bonas, Doreen Gu¨rlebeck, Daniela Bu¨ttner, Monique Egler,
SimoneHahn,SabineKay,AntjeKru¨ger,ChristianLorenz,RobertSzczesny,
andFrankThieme
Structure and Function of RXLR Effectors
ofPlantPathogenicOomycetes ......................................161
William Morgan, Jorunn Bos, Catherine Bruce, Minkyoung Lee,
Hsin-YenLiu,Sang-KeunOh,JingSong,JoeWin,CarolynYoung,
andSophienKamoun
The Biotrophic Phase of Ustilago maydis: Novel Determinants
forCompatibility...................................................173
Thomas Brefort, Kerstin Schipper, Gunther Do¨hlemann,
andRegineKahmann
VirulenceEvolutioninMalaria ......................................183
M.J.Mackinnon
TheInsandOutsofHostRecognitionofMagnaportheoryzae ...........199
SallyA.Leong
Index .............................................................217
Contributors
FrederickM.Ausubel
DepartmentofMolecularBiology,MassachusettsGeneralHospitalandDepartment
ofGenetics,HarvardMedicalSchool,Boston,MA,USA
RajendraBari
TheSainsburyLaboratory,JohnInnesCentre,ColneyLane,NorwichNR47UH,
UK
LauraE.Bartley
Departmentof PlantPathology,One ShieldsAvenue,Universityof California,
Davis,CA95616,USA
ThomasBrefort
Max Planck Institute for Terrestrial Microbiology, Department Organismic
Interactions,Karl-von-Frisch-Strasse,D-35043Marburg,Germany
UllaBonas
Department of Genetics, Martin-Luther-UniversityHalle-Wittenberg, Halle,
Germany
[email protected]
JorunnBos
DepartmentofPlantPathology,OhioStateUniversityOhioAgriculturalResearch
andDevelopmentCenter,Wooster,OH,USA
CatherineBruce
DepartmentofPlantPathology,OhioStateUniversityOhioAgriculturalResearch
andDevelopmentCenter,Wooster,OH,USA
DanielaBu¨ttner
Department of Genetics, Martin-Luther-UniversityHalle-Wittenberg, Halle,
Germany
EdwardJ.Cargill
CanineGeneticsLaboratory,DepartmentofPathobiology,CollegeofVeterinary
Medicine,TexasA&MUniversity,CollegeStation,TX77843-4467,USA
xi
xii Contributors
HansH.Cheng
USDA,ARS,AvianDiseaseandOncologyLaboratory,3606E.MountHopeRd.,
EastLansing,MI48823,USA
N.Clairoux
CentreforHost-ParasiteInteractions,InstituteofParasitology,McGillUniversity,
SteAnnedeBellevue,Quebec,Canada,H9X3V9
LeighAnneClark
CanineGeneticsLaboratory,DepartmentofPathobiology,CollegeofVeterinary
Medicine,TexasA&MUniversity,CollegeStation,TX77843-4467,USA
AnneE.Dorrance
DepartmentofPlantPathology,TheOhioStateUniversity,OARDC,1680Madison
Ave.,Wooster,OH44691,USA
GuntherDo¨hlemann
Max Planck Institute for Terrestrial Microbiology, Department Organismic
Interactions,Karl-von-Frisch-Strasse,D-35043Marburg,Germany
DaolongDou
Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State
University,Blacksburg,VA24061,USA
MoniqueEgler
Department of Genetics, Martin-Luther-UniversityHalle-Wittenberg, Halle,
Germany
E.Estuningsih
IndonesianVeterinaryScienceResearchInstitute,Bogor,WestJava,Indonesia
RhondaL.Feinbaum
DepartmentofMolecularBiology,MassachusettsGeneralHospitalandDepartment
ofGenetics,HarvardMedicalSchool,Boston,MA,USA
K.J.Fullard
Reprogen-Centrefor AdvancedTechnologiesin Animal Genetics and Repro-
duction,Faculty of VeterinaryScience, University of Sydney,Camden NSW,
Australia
DoreenGu¨rlebeck
Department of Genetics, Martin-Luther-UniversityHalle-Wittenberg, Halle,
Germany
Sang-WookHan
Departmentof PlantPathology,One ShieldsAvenue,Universityof California,
Davis,CA95616,USA
SimoneHahn
Department of Genetics, Martin-Luther-UniversityHalle-Wittenberg, Halle,
Germany
Contributors xiii
ReginaHanlon
Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State
University,Blacksburg,VA24061,USA
InaHoeschele
Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State
University,Blacksburg,VA24061,USA
RaysH.Y.Jiang
Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State
University,Blacksburg,VA24061,USA
Present address: Laboratory of Phytopathology, Wageningen University,
Binnenhaven5,NL6709PDWageningen,TheNetherlands
JonathanD.G.Jones
TheSainsburyLaboratory,JohnInnesCentre,ColneyLane,NorwichNR47UH,
UK
SophienKamoun
DepartmentofPlantPathology,OhioStateUniversityOhioAgriculturalResearch
andDevelopmentCenter,Wooster,OH,USA
[email protected]
RegineKahmann
Max Planck Institute for Terrestrial Microbiology, Department Organis-
mic Interactions, Karl-von-Frisch-Strasse, D-35043 Marburg, Germany,
[email protected]
SabineKay
Department of Genetics, Martin-Luther-UniversityHalle-Wittenberg, Halle,
Germany
N.M.Kingsford
Reprogen-Centrefor AdvancedTechnologiesin Animal Genetics and Repro-
duction,Faculty of VeterinaryScience, University of Sydney,Camden NSW,
Australia
KonstantinosKrampis
Departmentof Crop Soiland EnvironmentalScience, VirginiaBioinformatics
Institute, Virginia Polytechnic Institute and State University, Blacksburg,
VA24061
AntjeKru¨ger
Department of Genetics, Martin-Luther-UniversityHalle-Wittenberg, Halle,
Germany