Table Of ContentGenBank flat file:
LOCUS DQ246664 319299 bp DNA linear VRT 03-NOV-
2005
DEFINITION Oncorhynchus mykiss SYPG1 (SYPG1), PHF1 (PHF1), and RGL2 (RGL2)
genes, complete cds; DNaseII pseudogene, complete sequence;
LGN-like, PBX2 (PBX2), NOTCH-like, TAP1 (TAP1), and BRD2 (BRD2)
genes, complete cds; and MHCII-alpha and Raftlin-like
pseudogenes,
complete sequence.
ACCESSION DQ246664
VERSION DQ246664
KEYWORDS .
SOURCE Oncorhynchus mykiss (rainbow trout)
ORGANISM Oncorhynchus mykiss
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Euteleostei;
Protacanthopterygii; Salmoniformes; Salmonidae; Oncorhynchus.
REFERENCE 1 (bases 1 to 319299)
AUTHORS Palti,Y. and Hansen,J.D.
TITLE Genomic sequence and annotation of a region that harbors major
histocompatibility genes in rainbow trout (Oncorhynchus mykiss)
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 319299)
AUTHORS Palti,Y. and Hansen,J.D.
TITLE Direct Submission
JOURNAL Submitted (17-OCT-2005) National Center for Cool and Cold Water
Aquaculture, ARS-USDA, 11861 Leetown Rd., Kearneysville, WV
25425,
USA
FEATURES Location/Qualifiers
source 1..319299
/organism="Oncorhynchus mykiss"
/mol_type="genomic DNA"
/db_xref="taxon:8022"
/clone_lib="Swanson 10X BAC library"
gene <21292..>29844
/gene="SYPG1"
mRNA
join(<21292..21435,22024..22122,24025..24264,24519..24848,
26515..26659,26781..26925,27075..27311,27576..27777,
28094..28302,28612..28825,29224..>29844)
/gene="SYPG1"
/product="SYPG1"
CDS
join(21292..21435,22024..22122,24025..24264,24519..24848,
26515..26659,26781..26925,27075..27311,27576..27777,
28094..28302,28612..28825,29224..29844)
/gene="SYPG1"
/codon_start=1
/product="SYPG1"
/protein_id="ABB52822"
/translation="MQSFKESHSHESLLSPSSAAEALDLTLDEDAIIKPVHSSILGQE
YCFEVTTASGTKCFACRSGAERDKWIENLQRAVKPNKDNSRRVDNVLKLWIIEARELP
AKKRYYCELCLDDMLYARTTSKPRTDTVFWGEHFEFNNLPAVRNLRLHLYKETDKKRR
KEKSTYLGLVSIPISSITGRQFVEQWYPVIQPSVLAKGQAGGKIINASLRLKSRYQTM
SILPMELYKEFAEYVTNNYRTLCAVLEPLLSVKSKEEVACALVHILQSTGKAKDFLSD
MAMCEVDRFIDREHLIFRENTLATKAIEEYLKLIGHKYLKDAIGEFIRALYESEENCE
VDPMRTPPSVLPDHQANLRMCCELALCKIVNSHCVFPRELKEVFASWRVRCAERGRED
IADRLISGSLFLRFLCPAVMSPSLFNLTQEYPDEQTSRTLSLISKVVQNLANFSKFGM
KEEYMCFMNEFLEMEWGSMQQFLYEISNLDSVSNAGGFEGYIDLGRELSILHSLLWEV
MAQLSKDAIIKLGPLPRLLNDISMALRNPHLQRQPSHQNQTDRVHERQTERLLSRPSF
HRGVSSEFQNLMMKDLNSSIDITRLPSPTSGVSGGGVMPSRAHAQLSFQERDHPHRAS
KDVFYVTRPPLARSSPAYCTSSSDITEPDHKASITGMGSFGGLSSQGGGGLGSGLSGQ
LRAGGRHSAGSGGSSMSGGLRLSQLSQMGTTTDSLSQQQQQQAAALRYPLSFQNPLFH
LATGTADGPHLHHQHSRAHLPPPLLLAPEPDPGGSHQAYIPQFAHGGFSRSEDLSTLR
TGAGHLGQPAIIHSHSYSDDYSRADYARRQLSMHGQVWINLRSRTCLQSCSTFVQISL
FVSPT"
gene complement(<125842..>135286)
/gene="PHF1"
mRNA complement(join(<125842..126087,126545..126639,
127159..127245,127930..128011,128119..128197,
132494..132572,135202..>135286))
/gene="PHF1"
/product="PHF1"
CDS complement(join(125842..126087,126545..126639,
127159..127245,127930..128011,128119..128197,
132494..132572,135202..135286))
/gene="PHF1"
/codon_start=1
/product="PHF1"
/protein_id="ABB52823"
/translation="MLRVQLRSAKFRQHWIAVVFAAVEYTVTDFSGDAEQHIYGYDTL
YPCGSCTKLLRMGGVSEGDDVLARWSDGLLYLGNVKRVDGVKQCCLVRFEDNSEFWVL
RKDIHSFSVGVEEVCCICDAPPLKEPLINCLKCRHGYHPECHTPSIEPEADSNSWICR
QCVFAVATKFPSNVIYLECTDMTVSGEVAVVNRFVKIVFQRGGAIKRGRFARLMQIMK
LRLPYQLSSLDWDPQHLTNQQQCYCYCAGPGE"
gene <151383..>162236
/gene="RGL2"
mRNA join(<151383..151508,153504..153587,153733..153878,
154091..154147,154314..154507,154818..154924,
155296..155511,156087..156316,157014..157098,
158294..158353,158716..158802,158925..158957,
159257..159378,160955..161048,161392..161616,
161848..161962,162058..>162236)
/gene="RGL2"
/product="RGL2"
CDS join(151383..151508,153504..153587,153733..153878,
154091..154147,154314..154507,154818..154924,
155296..155511,156087..156316,157014..157098,
158294..158353,158716..158802,158925..158957,
159257..159378,160955..161048,161392..161616,
161848..161962,162058..162236)
/gene="RGL2"
/codon_start=1
/product="RGL2"
/protein_id="ABB52824"
/translation="MPACLPACLPACLPACLPACLACLACLPACLPACVSPLCVQQST
VLEEKEDGVIYNVVVKQQHGAPNSATCVKAGTEEKLVQHLLHSFAMGDSSFINIFLST
YRSFTSTKRVLDILIDRLQHPPGESTRSQTRQPFNRAVCMVFSMWLSEYPEDFRSLGE
PGLLLRLAPLLPSDPSGTEIRGRLLRLAEELSEQALLPDSSSDRTIASPPADPTKFDP
TNILGFPAGLIAEQLTKIETELFVRLVPYHCLGSLWSQRDKKGREGVCWSVRATVRQF
NRLANAVMASCLWPTQLRSQQRACLLEKWISVAEVFMGEVTLGMYIVDHVRQRVPNNP
IDRRQVFSDNAALCVFQQECRARKNFSSLYAIVSALQSNPVHRLRRTWLETDREAVRR
YEELSNIFSEKDNYSQSRELLKEEGTSKFANLDGKMTNRRQIGSSAQGTVPYLGIFLT
DLTMLDTAVKDRLENGYINFDKRRREFEVLAQIRLLQSSCKNCVFLTDEAFLQWYQSV
PSLNEEESLNSSRTSLVADSDGLFDFPSPVCHFLSKFTKHMKSPSVSCLDVDSSPPTN
DPIPSALTPSTPVKSHRRSVSCGNNPTNNNKGSEPDMRIVRIRMDLQDGNMYRSILVT
SNDKTPTVISSALEKHSQDPKQASRYELIQLLPEGKELVIPATGNVFYAMTSSSVDFL
LRRQGGNTPFRSQPISTETSATFPRIKAKGRRQLFPK"
gene complement(164806..169585)
/gene="DNaseII"
/pseudo
CDS complement(join(164806..165224,165383..165607,
168048..168206,168271..168382,168411..168613,
169012..169308,169495..169585))
/gene="DNaseII"
/pseudo
/codon_start=1
mRNA complement(join(<187423..187563,188211..188437,
188766..188925,189242..>189751))
/product="LGN-like"
CDS complement(join(187423..187563,188211..188437,
188766..188925,189242..189751))
/codon_start=1
/product="LGN-like"
/protein_id="ABB52825"
/translation="MEVVMEYPGVKVETVEEEHLEDLIIIKEGDVERVVEGGTEPITG
KSNDEDSSEEEDATARHGQIGKANTESGDGDKRKKDNQINQAKGETGTEEGVEHIKGM
DELVMDRQKMECKKEGMVMVDITEKYKTTEHDLKTDKPSQGLQVGTNIHLPSDQLPKD
TLSPEHAQKQAQRLTPYFPDALYDLVFTLQEGRRLNDQRCSFRGRRRCHSEPNTYIPA
HRAHRVHFSSMTSLQKDEFFDLLATSQGRRLDDQRAELHDTPPPKPKANKKRSSVKDT
KPKKSAPIAVQNEDLYNMILMSQAQGRLEEQRSAAPGPMDDEDFFSLLLSVQGGRMED
QRTELPGILGT"
gene <195665..>200086
/gene="PBX2"
mRNA join(<195665..195713,197063..197307,197729..197919,
198662..198797,198898..199039,199736..199824,
200006..>200086)
/gene="PBX2"
/product="PBX2"
CDS join(195665..195713,197063..197307,197729..197919,
198662..198797,198898..199039,199736..199824,
200006..200086)
/gene="PBX2"
/codon_start=1
/product="PBX2"
/protein_id="ABB52826"
/translation="MKPALFSVLCEIKEKTGLSMRNAQEEESQDPQLVRLDNMLLAEG
VAGPEKGGGAAAAVSAATSSGGMSPDSSLEHSDYKSKLSQIRNIYHTEMEKYDQACSE
FTTHVMNLLREQSRTRPVSPREIERMVAIIHRKFSSIQTQLKQSTCEAVMILRSRFLD
ARRKRRNFSKQATEVLNEYFYSHLANPYPSEEAKEELAKQCSITVSQVCNWFGNKRIR
YKKNIGKFQEEANIYAMKTAIVATQSEDSPHTPNSTGSGGFSLTGPDLFLGVPPMNGE
QPVYMGAQTNGNWQGQNTPPSATSPGNDHSEESD"
mRNA complement(join(<201034..201556,201672..202003,
202190..202287,203064..203165,203522..203657,
204158..204249,204438..204667,204777..205104,
206631..>206682))
/product="NOTCH-like"
CDS complement(join(201034..201556,201672..202003,
202190..202287,203064..203165,203522..203657,
204158..204249,204438..204667,204777..205104,
206631..206682))
/codon_start=1
/product="NOTCH-like"
/protein_id="ABB52827"
/translation="MLVMWTAVLLGLSRCCQGHIHYCRDHYSNSYCDQGCESAACGWD
GSDCHRHHSPLWAKGTLLLHTHVPLQHGTFSNSSLLWALSTLLQTPLKLRGTVPLDPS
KDLFTFNPQQLENLLAQASSDDSNGSLLFLQVDNRPCSRLPSTCFPYAIEAANFLRAA
TSSTRVSVPSHPELKAIISVRGVGEEIGGREEDPVEEKEDTNDGVTPPWIWAVIGVAT
GLVLALVLIVVLVIRRDLDIGSDTDFTQSSMEDINRSICDHRTQEQKHYRSPPSHPQS
PIQHGSVVLIRAVRSGLDRVVLELLRAGVPVNNTDHTGRSALHWACSVNHLSLTRTLT
RYGAAVDLQDNKGETALFLSALHGCYDTARFLLLNGANQDLSDRRGRRALDVAREGMH
HQVLELLLAHRVQRGPIPMEQANDMLWDEHAFLYSQWVNSAGLPGRSASFSGVIGHRD
MSSPPPSDLSMGRVQCPSPQNWRPQLNQSATALVTPRIMGRPPRPISTLQEVTSEDED
RERPQEVPRAATPHFLLPQPAPRQRSFSCTQNALQRRSSSQQPEPTYVALSEKIATEP
IERVIVVPPTDAPTQSDRRSIVDSSDNPRRAAPEIEAASFKKAEQKARSEKLNNHMPD
SNQTAL"
gene <208782..>217102
/gene="TAP1"
mRNA join(<208782..209099,209201..209508,209697..209827,
214116..214321,214649..214846,215129..215257,
215504..215692,215790..215963,216127..216286,
216517..216653,216875..>217102)
/gene="TAP1"
/product="TAP1"
CDS join(208782..209099,209201..209508,209697..209827,
214116..214321,214649..214846,215129..215257,
215504..215692,215790..215963,216127..216286,
216517..216653,216875..217102)
/gene="TAP1"
/codon_start=1
/product="TAP1"
/protein_id="ABB52828"
/translation="MPKMNFSPLLFLCMDVCVVQTVRLAQLSPLLLHHPLITLWGGSL
LRAGLHLFLTFKFPGSTPWMSSFEGLQSMGVLCFHCPLYISLLWACGQSILGQLWGWH
SWQGLLQGYCVTVVACLYWTRYVPSLLTKPTKEPQKKTGASLEKLMGYMKPYFIRFGA
VLSLVVISSLGEMAIPHYTGRMTDWIMNEDEPEAFTHAITVMSLITVMSAVCEFVCDL
IYNITMSRIHTSIQGLVFQSVLKQEIAFFDTAQTGDLVSRITTDTNDMSESLSEKLSL
LMWYFMRVTFLFIFMLNLSWKLSLFTAMGLPIIWVIPKISGKWYQELGAKVQKSLAQA
NDVATETFSSMKTVRSFANEEGETERYRKRLEKTYSLNKEEAAAYAASTWTNSMSSLF
LKVSILYYGGSLVTGGTVSSGDLVAFVLYELQFSSAVEAVMSYYPSVMRAIGGSEKIF
EYVDRQPQVPPEGTLAPQNLEGHVEFKNVTFTYPTREDTPVLKGLSLELRPGQITALV
GASGAGKSTCVSLLERFYLPQEGEILLDGQPLHSYKNQYLHDKISVVSQEPVLFARSV
KENIKYGRDDATDEEMYRAAELANAHKFISDLPNGYDTDAGEKGGQVSGGQKQRIAIA
RALIRKPRILVLDDATSNLDTESEHLVHQALLKDSNPCSVLLIAHKLSTVEKANHIVV
LEEGKVLEEGSHVELLEKGGTYADLVNKQNTGFQRKEGEELKN"
gene <223073..>228145
/gene="BRD2"
mRNA join(<223073..223327,223542..223679,223843..223984,
224198..224355,224527..225036,225255..225383,
225727..225978,226412..226686,227211..227536,
227796..227921,228018..>228145)
/gene="BRD2"
/product="BRD2"
CDS join(223073..223327,223542..223679,223843..223984,
224198..224355,224527..225036,225255..225383,
225727..225978,226412..226686,227211..227536,
227796..227921,228018..228145)
/gene="BRD2"
/codon_start=1
/product="BRD2"
/protein_id="ABB52829"
/translation="MEHHVSGPGKRMRKPSLLYEGFESPQLPHAPPPPPVQPPVRDPG
RQGCMTNQLQFLQKAMIKSLWRHHFAWPFHEPVDAFRLNLPDYHKIIKQPMDMGTIKK
RLENNYYRSASECMQDFNTMFTNCYIYNKPTDDIVLMAQSLEKVFLQKVAQMPQEEIE
LPPPAPRGKPGKGGRKSNMWKAHQVPAVSQSAYSPSSSDTGDSDTPPQTMLPKSLPPT
QLLSLHPTLPTAKKKGVKRKADTTTPSNMMTMPLSVGGGRMVGLGKGGHGQGLSHDPS
TLCLTSLGDMDPPPSLVKGPMGPGGPVLLQPMIAGGGKTLARRGGSGRPIKPPKKDLP
DSVQPKAPRRAKLSQQLRYCNSVLKDLLSKKHAAYAWPFYKPVDASALGLHDYHDIIK
CPMDLSNIKRRMDSREYRDSQQFSADVRLMFSNCYKYNPPDHDVVGMARKLQDVFEFR
FAKMPDEPLQQAPPKSRGMGGSMGTHAHGGGDSSSSSSSSSSSSESEPSSESESSPSS
DSEEERAHRLAELQDQVCTQLRAVHEQLAALSQGPIVKNKKKREKKDKKEKKKKKKPE
KRSRGRPSAEIGGEDWEMPTAKPMRTPKSKSSSRSSAPASSQGKRGPGKKKGSKNTKK
SQAATMPYYASPTFSMLPHYDSEEEEETSPMSYDEKRQLSLDINKLPGEKLGRVVHII
QSREPSLRDTNPEEIEIDFETLKPSTLRELERYVMTCLRKKPRKPYVKKGGPGKSREE
LTLEKKRELERRLQDVSGQLNSGKKPQKPKAEKLSGVEPHAQPSRLSGSSSSSDSSSS
SSSSSSDTSESDSG"
gene 235220..246752
/gene="MHCII-alpha"
/pseudo
CDS join(235220..235236,236170..236341,237249..237510,
241720..241897,241996..242374,246552..246752)
/gene="MHCII-alpha"
/pseudo
/codon_start=1
gene complement(266122..292969)
/gene="Raftlin-like"
/pseudo
CDS complement(join(266122..266341,268551..269303,
269549..269677,270109..270296,274319..274437,
279732..279898,280065..280251,280606..280905,
283832..283951,284018..284303,285974..286082,
291119..291296,292885..292969))
/gene="Raftlin-like"
/pseudo
/codon_start=1
ORIGIN
1 acacctgtat ttggggagtt tctcccattc ttctctgcag atcctctcaa gctctgtcag
61 gttggatggg gagcattgct gcacagccat tttcaggtct ctccatagat gttagatcgg
121 gttcacgtcc gggttctggc tgggccactc aaggacattc agagacttgt cccaaagcca
181 ctcctgcgtt gtcttggctg tgtgcttagg gtcattgtcc tgttggaagg tgaaccttcg
241 ctccagcctg agatcctgag tactctggag caggtttttg tcaaggatct ctctgtattt
301 tgctcagttc atctttgcct tgatcttgac tagtctccca gtccctgccg ctgaaacaca
361 tcgccacagc atgatgctac caccatgctt caccttaggg atggtgccag gtttcctcca
421 gactttacct tatcgttggc attcaggcca aagagttcga tcttggttta atcagaccag
481 acaatgttgt ttctcatggt ctgagagtcc tttaggtgcc ttttggtaaa ctccaagcag
541 gctgtcatgt gccttttact gaggggcttc cgtctggcca ctttatcata aaggtctgat
601 tggtggaatg ctgcagagat agttgtcctt ctggaagatt ctcccatctc cacagaggaa
661 ctctagagct ctgtcagagt ggccatgggg ttcttggtca cctccctgac caaggccctt
721 ctcccctgat tgctcagttt ggccgggcga ccagctctag caagagtctt ggtgggtcca
781 aacttcttcc atttaagaat gatagaggcc actatgttct tggggacctt caatgctgca
841 gacatatttt ggtactttcc ccagatctgt gcctcgacac aatcctgtct cggagctcta
901 cggacaattc cttcgacctc aaggcttggt tttttctcta acatgtactg tcatttgagg
961 gattccaatt cagtccggtg cggtcttcca gacagtgcag ttgtgcttca agtgtgctct
1021 ctgtgtgatg acttgtacgt cggttgtgcc tacatggagt actgtcattt cgagtctcat
1081 atgcaaagtt tttaatgatt tataaatttg cacaaattta taaaaacctg ttttcctttt
1141 gtcattatgg ggtattttgt gcagattgct gaggattaaa aaaagaacac attttaaatc
1201 aaggctgtaa tgtaacaaaa tgtagaaaag gtcaaggggt ctgaatactt tccaaagaca
1261 ccatccagcc tggcctcata gactagatgt aaaagttaac aaaaatctgg tacactcaaa
1321 ttagtatgat atggtatgtt tggtatggtt acatcaggcc gaaggttatt taaggcaaaa
1381 attaaaggag ggtagttggt cggtgtggat ggttgagcga atagctactt tgcaactaca
1441 tagcatgtta gctaacactt cccctagccc tttcacctaa ctcctgacct taaccttaac
1501 ccctagccta gttaacatta gccacttagc taacgttagt gttagccacc tacttaacat
1561 tagccacaac aaactggaat tcttaacata tcatacgtat tgcaaatttg tagcatatat
1621 tatgaattgt aatatatcat acgaaatgga tgatggacat ccacatatta atacatgcca
1681 taccaaacat aacgatcata ctaatttgag tgtcccagat ttttgtttac tatgttatgt
1741 ctacccctga ctctgggttg atatttcagc tccagcattt attgattttc aattacagta
1801 aagctcgaca ttattcaaat tgctgttgac aaaatcaaaa taaccaaaat aatgtgaaca
1861 ataggtaaag aaagaaagaa tgctgttgat aatacgtgtg attttctgta aaatgtctgt
1921 gtaagtcaat aagtgcttct gttggtgctg catacggtca gtgacgcaca tacagtacag
1981 tggaggaatc gaagtgaaga ggcagaatgt atggatggag agaggcagta ccactgaagt
2041 gtatgctggt tggtttatta cctttgtact cggggtggaa cgggcgcgag acggggctgc
2101 actaggatgg attggcgcct cccctaagag aaatcaccgt atctcatcaa cacaggagaa
2161 gaggagagga acgatagaga aaaggaggag aggagaggct tgtgtgcact gaagaaagta
2221 aaaggtagaa gttgggtgtc gagggttgag gagcattagg gatactcaac gcccacagga
2281 cacacacaaa cacaaaggaa cacacaccac cattcgcgcc aacacaaacc cagcagcctg
2341 aaagcacaag agggcccaac atgtcaacca agtctgcatg ctgaggaagc aaaccaaggc
2401 tgttgataca cacatgcagc agtacagatg gtaagtagcc atcttgtgca agccagaaca
2461 tgaggcagct tgatgtacaa gtacaccctc tggacatgat gctactctat cgcagggcca
2521 tagcccccaa cctatctcct taacgctgag ccaagcagag acacattggg tcccgttttt
2581 agtctttgta atgactcggc ctgggatcga actcccaact ttccaatctc agggcggaca
2641 ctgacaacaa ggccactgag ttggtttggc agtaaagata gctgcatttt aattcaagct
2701 aaatgtcatt cattgatcca aagattgaaa agtcttgtcc agacaaatgg tatctctgat
2761 ctcctctgaa gctgaggggt tagaagttga ggcaaaaggt catgctactg ctaaacatgc
2821 agtaatcatt ggcaaaagta ataaacacca ctgttactgc aacaaggaat aaatagtatt
2881 aataaacaga gttaaacaat ataaatatgc atacacatgt aaaaaaaggt tgaatgacac
2941 ataacacact taaatacata cagggttata gagacagtag ataactgatg tgaaagagat
3001 aaccatgtaa agtgagacat gcattatatt cacaatgatg catggaacat ataacattaa
3061 gttggagagg atatgtacag tacaacatcc aaatgatgat ttatttgtta tgagtcattc
3121 caaggacagg ctgatccact gtactttcaa gagtgctacc actagttgct gcctacaggt
3181 gtaatatatt aattggaccc gtttctcaca gcaggaaaat aatcctgcac caacaggaat
3241 gtggataata attaatggat atgtttgtag gggttgatac atttttcaat agggcaaatc
3301 aagtcaaaca tttaaagtgg aaaatacaaa acgttagaag ctttataaac cctcaaatac
3361 aaacaagttt gcatttcctg ctgaacagga aaattctctg ttacaacaga ttgatcaaat
3421 taagatagaa catttgtata aacggtagta ataaaaacaa gcaatattat tacattaact
3481 aatttaatca agtttgacaa tgaaatccca ttaaaaccag atatttagta gagagggggt
3541 ggaggtattc tcaacataat gctgtaggaa tatgaatcca caaattccac gcaaaaagct
3601 gaaagccgag tgaactgccc actgttggga taataaagat aacgtgaacg tgaaccctat
3661 tagtcaccga cacccccacc tagacacccg gcattaaaca catgttgctg ccatggcgat
3721 ggacaagtga ttgtacggct cactgcaaat aatgacagat atttgaaacg caatcattaa
3781 aacatgccga catgctctcc ttgggcatag ccatgatggg aatgtaatgg tacacaaaca
3841 attggcccac aacaatttat ggcttcattt tataatctta ttgactataa ccttcagaac
3901 aatggagata cacagaaatg ttcgcgtggt tgcatgataa tggacaatta acatgagata
3961 aaagaaaacc tgggtggaag catgacatga aaataatgaa tgtcatcaga agttccatgt
4021 tggactgctg tgatttaata ctgtatctag gaagagaccc aaacagcttc atgttggata
4081 gcaaatctgc ctctttcagc ttggaaacaa aaccaatgtc aagatggatg cccagccttg
4141 gatgctccta cgaccacttg ggaagagcta ctcaaactat atctctcagc cctcagaaag
4201 aaccaataga tttcgattcc aatgctgtct gaggctgtag gccaagtcta tcatgacact
4261 ccctcaacta catgtcaacc acagactggc cacgttcgat cgagtgaaac cagtgcgagc
4321 gcaaaactct ggtctgctgc ttgtctggca actgaacaca acgccacgca tcgctggacg
4381 gctttacccc ctttcaacca cagtttctaa gcctttctgg ctaatctctc cctctccctc
4441 tccctccctc ccttcctctc cctcaccctc tctctctctc tctctggggg agctgtgtac
4501 tgaatggaga aataacagga gagacacatt ggatcactgc tcacttgagg aagcgtggct
4561 gaagccctga ctgttcgaca ccttgcaggg gtgctgcatt cagctgcatt cttatctggg
4621 acatagcggg agccctgtct gttcacaccg ctcaaacttt ctgcttttgt ttttatctct
4681 gcatgtcaga aaatgtctgt tgcctctatt gagtctgatt tgactcggat tgggataaag
4741 acatttggat tggggaagtg gcagggtggg actcagtgaa gcttgagcgt acatgtgtca
4801 tgttgtttgc aagagacatt gtggtttgac acatactcac tctctctcgc acattctttt
4861 acacacacaa acacacacac acacacacac acacagaaat ctggcatgtc tttgcagcat
4921 gactcatgat tgagggtggg cttgaccggt ttgacaggag atgatgggtg gctggctaaa
4981 agcatggacc gagagacatt gagtgtggat gctgaagacg ttgtcggcct gacaaatgaa
5041 ctcatcctca ggaccaaaac tgttcaatag tcgtgtatta tgtctgtctt gcatttgtgt
5101 tagactggta atacaacttg acgttgacat gctcagtctg aataattggg aggaaggagt
5161 ttggattgag gaagcggttg ggtgggactc atcttctggt ggaacaggga tttgatttaa
5221 acgaatgaaa gaagcttgag catacatctg tgatgtcgtt tgtaagagac attggggttt
5281 gacacactct gtctctcttt cacacacaca cacacacaga cacatacaca cacacacact
5341 gaaagctggt atgtctttgc agcatgactc atgcttgagg gcgggcctga cgagttcgat
5401 aggagatgag tggctggcta aaagcatgga ccgtgaaaca ttgagtgtgg atgctgaaga
5461 cgttgtcggc ctgacaaatg aactcatcct caggaccaaa actgttcaat agttgtgtat
5521 tatgtcttgc atttgtgttg gactggtaat acaacttgat ttaatacata tagttcacac
5581 aaagttgata gacgtgtctg agatgtacag ttactacaga cgctgatttg attacaaccc
5641 ggatgtggtc agacagaata taaacagatt gattgagaga cagacacaag atgtaaacag
5701 acgttctttg accttcaaag cacctaagcg gattgacaga caaatgagtt tcacccaaac
5761 ccaaggactt gtctggacga aataaaaggg acaaatcaac aaagagatga aaacaacata
5821 gagaaggata gagagataaa gacacaggcc atcctacaga catggcgacc ggaagaagaa
5881 aatcacagac ctgatcggcg aagaccctaa cgttagcttt tggcggctca accacggctc
5941 ctccccttat ctcatcctcc acagccataa gtctgagaga gagagagtga gagagagaga
6001 gagtgagagt tcaaacagtt gtgagagaat tgtgagtaaa ctagacaaga agtagctaag
6061 tgtaatacgt aaggcttata atgactgtcc aggtgcaagc tggatcgctc attgccctga
6121 aaaacgttga tttataccca ttacctggtc tatagtagtg ttgttaaaac ctctggtagc
6181 caaattataa tctattcaac caatgctgta actgtttaac atacactgct ctagtaatgc
6241 gaggaagcat ttttgaggca gttgaagtgc atgtttccat gttccccaag ggattcagca
6301 tgatgtgtct gtccaattca gggtgttttc caatgtaatc atgcctaatg atgtctagat
6361 tgtggtgttt tgccggttat cgtgttctga atggggttta attagcaata catcctcatg
6421 gaatagttga actgacacaa catgatagag attccaaatc cttgttacaa ccatttcaaa
6481 gagtcgtctt gcagggatat ttggaagctt attgctacag tctccatagg atatttggaa
6541 gcttattgct acagtctcca taggatattt ttcttgcctt gcaaattcac atttagacac
6601 gattactcag catcagaatt attttccaga gaagggaaca tggatcatta aatacttgcc
6661 tctggaattt caagatctgg gtcattcaag gcaatggttc tgatattttc ttcaacagac
6721 acaaaaggtg aaggatgaat taaaagtcac tgcaatcatg aggtcaaatc caagatggcg
6781 atcagctgtt tggtgatgga gattcaatga acaagggtac atatgacatc ctaactccta
6841 cctggtcaat atttctgagg taatgaaatt cttctgcttt gctcattata gatttcattg
6901 tcttcaatct tatcacatct actttccgcc tgaatgacat ggtggttttc atttaaagtc
6961 atacagaaaa gctgtgaaaa attgctgaca acgtggatga acttcagtgt taaactcctg
7021 agatgaacag aatgctgaga gaggactaat tacacaaaag gaatgactca ttttaataca
7081 gtgccttcaa aaagtattca cccccctttg actttttcac atttaaaatg gattacattg
7141 agattgtgtg tcactggctg gggttacccc ataatgtcaa agtggaatta tgtttttaaa
7201 catgttaaca aattaattaa aaattaaaag ctgaaatgtc ttgagtcaat aagtattcaa
7261 ccccttcgtt atggcaagcc taaataagtt caggagtaaa aatgtgctta agaagtcgca
7321 taataagtta catggactca ccgtgtgcaa taatagtgct taacaagact tttgaatgac
7381 tacctcatct ctgtacccca cacatacaga taattgtaag gtccctcagt tgagcagtga
7441 atttcaaaca cagattcaac cacaaagacc agggaggttt gtcaatgcct cacaaagagg
7501 ggcacctatt ggtagatggt aaaaaaaaag cagacattga atatcccttt gagcatggtt
7561 aagttattat tacactttgg acagtgtatc aatacaccca gtcactacaa agacacttcc
7621 taactcagtt gccggagaag aaggaaaccg ctcagggatt tcacgatgag gccagtgact
7681 ttaaaacagt tatagtttaa agactgtgat aagcgaaaac tgagactgga tcaacaacat
7741 aaaataaaac tgcaaaaaaa tgtgccaaag aaattaacaa ggcaaatata cacgggagtt
7801 gcttaccaag acaacattga atgttcctga atggcctagt tacatttgcc ttaaatcggc
7861 ttggaaatgc aagacttcaa aatagctgtc tagcaacaat caacaaccag cttgacagag
7921 cttgaatttt ttttataata atgtgcaaat gttgtgcaat ccaggtgttt cacagctgta
7981 atcgatgcca aaggtgacta acatacagta ttttgactca gggttgtgaa cacttatgta
8041 aattgcattt ctgtatttca atacaatttc taaaatagtt ttcactttgt cattgtgtgt
8101 agatgggtgt gattttttta aatacatttt ttattcagga tgtaacacaa caaaatgtgg
8161 aataagtcaa ggggtatgaa tactttctga aggaactgta taggacattg agcagtggca
8221 acagagaaag tgaggaccag acagccgatg tgattggtgc aaaaaaactg agccaataag
8281 ataagctaaa aacagaaata gcacagattt tagtcaaact attccaaaac gagtggttgg
8341 tttggacaga ggataacata tagtcatttt ccaccataat caagctgtca caattccgca
8401 gagaaagcat tctctgaata tctttatgct taacatacaa ctaaattgat gcttaacatg
8461 aataaataat gaaaatccac aggtgaagtt tcaaacattg gtgttagatg ttttattaca
8521 taaataatgt acagggattt atttgacaaa aataagaaag ggaaaaggaa tcaaacgtat
8581 gcactgactg aaacattggc actgatctaa gaaacaatga aatgtaacat gagtatacag
8641 tagaattcca aaaaaggcag acagtgattc acatgggtga tatgtaccaa aactaaagct
8701 gtatatctat ttacttcaag ttcaagtagt gtgcttgtca ggtcaagtct tacacgcagt
8761 caaaacaatg tgggtacttg tcaatatgag gtcagggaca ggtcatgata tctgacttgt
8821 ctgttacata gaaataaggc aggcgattgg gtgagtcaaa aggtcacatg atatgtagtc
8881 aattgtatgc acatcaacag taaactctca ctatgtgctg ctatttgcca tgtcaatcca
8941 aatgacttta ttgcacagtg acaagttata tatctctatg aaaactttaa aagtaatact
9001 gatgtaatat tatacatcta tacagactac caatattata cttgctacaa tgccaaacga
9061 gaggcaatct gatgatagtg aacaattctt gttccacatc gtatctcaaa aaatgactcc
9121 ctcaaagctc taactttagc aaacaatgac gccatttacc cttcggtttc ctatgactta
9181 ctgcagatca aaacttaaac caacgacata cagcaaaatt ataacagata tataaatctt
9241 aacactttag ataaatggca ccaatatcca tctggctaca tgattaacat tttcgttcaa
9301 agacgctata cagccatgtg taagtcaaag atataaatta tacattattt ttttacagta
9361 ctgtatatgc tgcatctatg gtatttaggg atttacagga tccatggtca tacatgcaga
9421 agtctcaata taatgtatgt taatatgggt tcatttgata ctgaaaggga cctgaaaaaa
9481 acctttaagt gtatgagttc tgtatgtata gtcatatgtt gtatctatgc atgtaaggtt
9541 tacatactca gtatctttgt gtgcctgaat gtaggcctac atacatatac ggattgcttc
9601 tgttcataaa tgctaaatgt agtctattat tgcacatctc gtaatgctaa aatattgcta
9661 tttcaataga ttaaaatagt taatttcatt ggtaatatca taacaaaatg tacatataga
9721 atcttagagt atccttattg gtatggcagt actggtgctt cagtggggta ttgataacat
9781 ttagaaaaag tgtgttactc tagcgtgtct gatattcttt gatatcatat aatctgtcat
9841 attcctctta agaaacataa ctgctactct agaggcacca agataaatca cacaaaaaaa
9901 aggctttcaa agaatatctg aagtcgtttc taagaagaat ggtgaatgag gtttgaaaaa
9961 caatgataga cgtttgggtt ttgtgaaatg tggaatgtat ggttaattat ccttttggag
10021 gacagtggat ataaccactt gagccactga aattgcttga aacatacttt caatgataaa
10081 taaaaaaaac gctaatagca tctcattcat tgacagcata tggatctgtc ttaaaacctt
10141 gcatccatcc actacttaca gaatcctcta gatgaccttg tcaactgtaa caatgccatt
10201 atccaaacta acttcaaagg ggaaggagaa cttgtcattt aaattaggtt tactctgttc
10261 tctttacaca tcatatgtta gggaaatact atcaaactgt ggttgcagtt tgtaaagatg
10321 gtattgttca tcctcatgtc aagctgttat ggtgatgaca acaagatgtc atgtactacc
10381 ttagtctttg tttcatgcat tttttatcaa aaacaccatt atagcctcat actgtatagg
10441 acagatagaa gtcatatgat gtcacctttc agtccattat tgtgcttttc aattcaatcg
10501 aggtgaatcc ctctcagttt acggttatcg gaataatcac cacagatgac gcaggtaaac
10561 tactgatgga aaaaaacaag catcatgttt gatatactgg caataaaatg gctgccaaat
10621 agtgcacaaa gggcctaaac atgtattttg ggttctttat gcaccaagtt atggggttat
10681 ggatgggatt gcttccatta agtacagcca ggaactgtct cggtcttcat tcgatttctt
10741 cttccctgga atggattaaa agtagcaaag ttccctgtga cacatatcta actatcaatt
10801 gcagattatt agaagtggtg aacaaaagca gaacatttac acaaatagtt tcctctctca
10861 agttcctcat ctcaagtcaa tttgtcaacg ttagtcagaa tgttcaatga acattttcct
10921 actgactggg tgaaaacaaa ttgcctaagg tatctgcata cagacatgaa tcattcatat
10981 gaatggattt cactggtgac ctctcacctt tgaaatgaat gtgcagttat tttgaagctg
11041 tcccattata tatatacact gctcaaaaaa ataaagggaa cactaaaata actgaatgaa
11101 tgaaatattc ttattaaata cttttttctt tacatagttg aatcacacac ctattatcaa
11161 tggaaatcaa atttatcaac cgatggaggt ctggatttgg agtcacactc aaaattcaag
11221 tggaaaacca cactacaggc tgatccaact ttgatgtaat gtgcttaaaa ctagtcaaaa
11281 tgaggctcag tattgtgtgt ggcctccacg tgcctgtatg acctccctac aacgcctggg
11341 catgctcctg atgaggtggc ggatggtctc ccgagggatc tcctcccaga cctggactaa
11401 agcatccgcc aactcctgga cagtctgtgg tacaacgtgg cgttggtgga tggagcgaga
11461 catgatgtcc cagatgtgct caattggatt caggtctggg gaacgggcgg gccagtccat
11521 agcatcaatg ccttcctctt gcagaaactg ctgacacact ccagccacat gaggcctagc
11581 attgtcttgc attaggagga acccagggcc aaccacacca gcatatggtc tcacaagggg
11641 tctgaggatc tcatctcggt acctaatggc agtcaggcta cctctggcaa gcacatggag
11701 ggctgtgcgg ccccccaaag aaatgccacc acacaccatg actgacccac cgccaaaccg
11761 gtcatgctgg atgatgttgc aggcagaaga actttctcca cggcgtctcc agactgtcac
11821 gtctgtcaca tgtgctcagt gtgaacctgc tttcatctgt gaagagcaca gggcgccagt
11881 ggcgaatttg ccaatcttgg tgttctctgg caaatgccaa acgtcctgca cggtgttggg
11941 ctgtaagcac aacccccacc tgtggacgtc gggccctcat accaccctca tggagtctgt
12001 ttctgaccgt ttgagcagac acatgcacat ttgtggcctg ctggaggtca ttttgcaggg
12061 ctctggcagt gctcctcctg ctcctacttg cacaaaggcg gaggtagcgg tcctgctgct
12121 gggttgttgc cctcctacgg cctcctccac gtctcctgat gtactggcct gtctcctggt
12181 agcgcctcca tgatctggac actacgctga cagacacagc aaaccttctt gccacatctc
12241 gattgatgtg cgatcctgga tgagctgcac tacctgagcc acttgtgtgg gttgtagact
12301 ccatctcatg ctaccactag agtgaaagca ccgccagcat tcaaaagtga ccaaaacatc
12361 agccaggaag cataggaact gagaagtggt ctgtggtcac cacctgcaga accactcctt
12421 tattgggggt gtcttgctaa atgcctataa tttccacctg ttgtctattc catttgcaca
12481 acagcatgtg aaatttattg tcaatcagtg ttgcttctta agtggacagt ttgatttcac
12541 agaagtgtga ttgacttgga gttacattgt gttgtttaag tgttcccttt tttttgagca
12601 gtatatatat atatatatat atagctcccg agtggcgcgg tggtctaagg cactgcatct
12661 cagtgcaaga ggcgtcacta cagtccctgg ttcgaattca ggctgtatca catctggtcg
12721 ggattgggag tcccatagga aagcacacaa ttgtccgagt ttgaccgggg taggccatca
12781 ttgcaaataa gaatttgttc ttaactgact tgcctagtga aataaaagtt acatttgact
12841 tttttaaatt aaaatatccc tgcatacatt tgagtgtaca ggttgaggcc tccccattat
12901 ttctccatac attaatgtat ctatttcata actatacatt atctagcctc tcaaatactg
12961 tatattcatc aatattcccc agatgatttc ccaaaattag cacctgccta agtaagattg
13021 ttggatattt cttggataaa cgtaatcaga caagagttct caacaataca ttaatttatt
13081 ttcgtctctc cattttagtt ctctctccac acctgtcttc tctttctctt aatctctaca
13141 tctccattct ccttctcctc caccacccct ctttttacct gttgattatt cctttaattt
13201 gggagtcttt ctccacctgc tgttgccgta gcctcctctc gctgtcctcc aggcgactct
Description:GenBank flat file: LOCUS DQ246664 319299 bp DNA linear VRT 03-NOV-2005 DEFINITION Oncorhynchus mykiss SYPG1 (SYPG1), PHF1 (PHF1), and RGL2