Fungal Genomics

432 Pages·2004·31.54 MB·English

by  Dilip K. Arora and George G. Khachatourians (Eds.)

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APPLIED MYCOLOGY
AND BIOTECHNOLOGY
VOLUME 4
FUNGAL GENOMICS
Edited by
Dilip K. Arora
Department of Botany
Banaras Hindu University
India
George G. Khachatourians
Department of Applied Microbiology and Food Sciences
College of Agriculture
University of Saskatchewan
Saskatoon, SK, Canada
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Editors
Dilip K. Arora
Department of Botany
Banaras Hindu University
Varanasi, India
Fax: [phone]
Tel:+ 91 542 2369570
E-mail: [email protected]
George G. Khachatourians
Department of Applied Microbiology
and Food Sciences
College of Agriculture
University of Saskatchewan
Saskatoon, Canada
Tel: [phone]
E- mail: [email protected]
Editorial Board
Deepak Bhatnagar USDA/ARS, New Orleans, USA
Thomas E. Cleveland USDA/ARS, New Orleans, USA
Eric A. Johnson University of Wisconsin, Madison, USA
Etta Kafer Simon Fraser University, Canada
Christian P. Kubicek Technical University of Vienna, Austria
B. Franz Lang Universite de Montreal, Canada
M. Hyakumachi Gifu University, Japan
Mary Anne Nelson University of New Mexico, USA
Helena Nevalainen Macquarie University, Australia
Nicholas J. Talbot University of Exeter, U.K
P. Tudzynski Institut fur Botanik, Munster,Germany
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Contents
Editorial Board for Volume 4 v
Contents vii-viii
Contributors ix-xiii
Preface xv-xvi
The Development of Genetic Markers from Fungal Genome Initiatives 1
Dee A. Carter, Nai Tran-Dinh, Robert E. Marra and Raul E. Vera
Inferring Process from Pattern in Fungal Population Genetics 29
Ignazio Carbone and Linda Kohn
Molecular and Genetic Basis of Plant-Fungal Pathogen Interactions 59
Seogchan Kang and Katherine F. Dobinson
Genomics of Candida albicans 99
Siegfried Salomon, Angelika Felk and Wilhelm Scha'fer
Molecular Genetics and Genomics of Phytophthora 137
Susan J. Assinder
Genomics of Phytopathogenic Fusarium 161
Haruhisa Suga and Mitsuro Hyakumachi
Genomics of Fusarium venenatum: An Alternative Fungal Host for Making 191
Enzymes
Randy M. Berka, Beth A. Nelson, Elizabeth J. Zaretsky, Wendy T. Yoder
and Michael W. Rey
Molecular Characterization of Rhizoctonia solani 205
Mette Liibeck
Genomics of Trichoderma 225
Manuel Rey, Antonio Llobell, Enrique Monte, Felice Scala and
Matteo Lorito
viii Contents
Genomics of Economically Significant Aspergillus and Fusarium Species 249
Jiujiang Yu, Robert H. Proctor, Daren W. Brown, Keietsu Abe, Katsuya Gomi,
Masayuki Machida, Fumihiko Hasegawa, William C. Merman, Deepak Bhatnagar
and Thomas E. Cleveland
Penicillium Genomics 285
John C. Royer, Kevin T. Madden, Thea C. Norman and Katherine F. LoBuglio
Genomics of Neurospora crassa: From One-Gene-One-Enzyme
to 10,000 Genes 295
Edward L. Braun, Donald O. Natvig, Margaret Werner- Washburne and
Marry Anne Nelson
Genetics and Genomics of Mycosphaerella graminicola: A Model for the 315
Dothideales
Stephen B. Goodwin, Cees Waalwijk and Gert H. J. Kema
Functional Genomic Analysis of the Rice Blast Fungus Magnaporthe grisea 331
Martin J. Gilbert, Darren M. Soanes and Nicholas J Talbot
Genomics of Entomopathogenic Fungi 353
George G. Khachatourians and Daniel Uribe
Genomics of Arbuscular Mycorrhizal Fungi 379
Nuria Ferrol, Concepcion Azcon-Aguilar, Bert Bago, Philipp Franken,
Armelle Gollotte, Manuel Gonzalez-Guerrero, Lucy Alexandra Harrier,
Luisa Lanfranco, Diederik van Tuinen and Vivienne Gianinazzi-Pearson
Keyword Index 405
Contributors
Keietsu Abe The New Industry Creation Hatchery Center (NICHe),
Tohoku University, Sendai 980-8579, Japan.
Susan J. Assinder School of Biological Sciences, University of Wales, Bangor,
Gwynedd LL57 2UW, Wales, UK ([email protected]).
Concepcion Azcon- Aguilar Estacion Experimental del Zaidin, CSIC, Granada, Spain.
Bert Bago Centro de Investigaciones sobre Desertification, CSIC,
Valencia, Spain.
Randy M. Berka Novozymes Biotech, Inc., 1445 Drew Avenue, Davis,
California 95616-4880, USA.
Deepak Bhatnagar Food and Feed Safety Research Unit, U.S. Department of
Agriculture, Agricultural Research Service, Southern
Regional Research Center, New Orleans, Louisiana 70124,
USA.
Edward L. Braun Department of Zoology, University of Florida, Gainesville,
Florida 32611, USA.
Daren W. Brown Mycotoxin Research Unit, U.S. Department of Agriculture,
Agricultural Research Service, National Center for
Agricultural Utilization Research, Peoria, Illinois 61604
USA.
Ignazio Carbone Center for Integrated Fungal Research, Department of Plant
Pathology, North Carolina State University, Box 7244 -
Partners II Building, Raleigh, NC 27695-7244, USA.
Dee A. Carter Discipline of Microbiology, School of Molecular and
Microbial Biosciences, University of Sydney, NSW 2006,
Australia ([email protected]).
X Contributors
Thomas E. Cleveland Food and Feed Safety Research Unit, U.S. Department of
Agriculture, Agricultural Research Service, Southern
Regional Research Center, New Orleans, Louisiana 70124,
USA.
Katherine F. Dobinson Southern Crop Protection and Food Research Centre,
Agriculture and Agri-Food Canada, London, Ontario N5V-
4T3, Canada, and Departments of Biology, Microbiology
and Immunology, The University of Western Ontario,
London, ON, Canada ([email protected]).
Angelika Felk Institute of General Botany, Department of Molecular
Phytopathology and Genetics (AMPIII), University of
Hamburg, Ohnhorststrasse 18, D-22609 Hamburg,
Germany.
Nuria Ferrol Estacion Experimental del Zaidin, CSIC, Granada, Spain.
Philipp Franken Institute for Vegetable and Ornamental Plants, Grossbeeren,
Germany.
Martin J. Gilbert School of Biological Sciences, University of Exeter,
Washington Singer Laboratories, Perry Road, Exeter, EX4
4QG, UK.
Armelle Gollotte INRA-CMSE, 17 rue Sully-BV154021034, Dijon Cedex,
France.
Katsuya Gomi The New Industry Creation Hatchery Center (NICHe),
Tohoku University, Sendai 980-879, Japan.
Manuel Gonzalez-Guerrero Estacion Experimental del Zaidin, CSIC, Granada, Spain.
Stephen B. Goodwin U. S. Department of Agriculture, Agricultural Research
Service, Department of Botany and Plant Pathology, 915
West State Street, Purdue University, West Lafayette, IN
47907-2054, USA ([email protected]).
Lucy Alexandra Harrier The Scottish Agricultural College, Edinburgh, United
Kingdom.
Fumihiko Hasegawa The New Industry Creation Hatchery Center (NICHe),
Tohoku University, Sendai 980-8579, Japan.
Mitsuro Hyakumachi Laboratory of Plant Pathology, Faculty of Agriculture, Gifu
University, Gifu 501-1193, Japan.