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DEVELOPMENTAL GENOMICS OF ASCIDIANS DEVELOPMENTAL GENOMICS OF ASCIDIANS NORIYUKI SATOH Copyright©2014byWiley-Blackwell.Allrightsreserved. WileyBlackwellisanimprintofJohnWiley&Sons,formedbythemergerofWiley’sglobalScientific TechnicalandMedicalbusinesswithBlackwellPublishing. PublishedbyJohnWiley&Sons,Inc.,Hoboken,NewJersey. PublishedsimultaneouslyinCanada. Nopartofthispublicationmaybereproduced,storedinaretrievalsystem,ortransmittedinanyformorby anymeans,electronic,mechanical,photocopying,recording,scanning,orotherwise,exceptaspermitted underSection107or108ofthe1976UnitedStatesCopyrightAct,withouteitherthepriorwritten permissionofthePublisher,orauthorizationthroughpaymentoftheappropriateper-copyfeetothe CopyrightClearanceCenter,Inc.,222RosewoodDrive,Danvers,MA01923,(978)750-8400,fax(978) 750-4470,oronthewebatwww.copyright.com.RequeststothePublisherforpermissionshouldbe addressedtothePermissionsDepartment,JohnWiley&Sons,Inc.,111RiverStreet,Hoboken,NJ07030, (201)748-6011,fax(201)748-6008,oronlineathttp://www.wiley.com/go/permission. LimitofLiability/DisclaimerofWarranty:Whilethepublisherandauthorhaveusedtheirbesteffortsin preparingthisbook,theymakenorepresentationsorwarrantieswithrespecttotheaccuracyorcompleteness ofthecontentsofthisbookandspecificallydisclaimanyimpliedwarrantiesofmerchantabilityorfitnessfora particularpurpose.Nowarrantymaybecreatedorextendedbysalesrepresentativesorwrittensalesmaterials. Theadviceandstrategiescontainedhereinmaynotbesuitableforyoursituation.Youshouldconsultwitha professionalwhereappropriate.Neitherthepublishernorauthorshallbeliableforanylossofprofitorany othercommercialdamages,includingbutnotlimitedtospecial,incidental,consequential,orotherdamages. Forgeneralinformationonourotherproductsandservicesorfortechnicalsupport,pleasecontactour CustomerCareDepartmentwithintheUnitedStatesat(800)762-2974,outsidetheUnitedStatesat(317) 572-3993orfax(317)572-4002. Wileyalsopublishesitsbooksinavarietyofelectronicformats.Somecontentthatappearsinprintmaynot beavailableinelectronicformats.FormoreinformationaboutWileyproducts,visitourwebsiteat www.wiley.com. LibraryofCongressCataloging-in-PublicationData: Satoh,Noriyuki. Developmentalgenomicsofascidians/byNoriyukiSatoh. 1onlineresource. DescriptionbasedonprintversionrecordandCIPdataprovidedbypublisher;resourcenotviewed. ISBN978-1-118-65604-4(AdobePDF)–ISBN978-1-118-65624-2(ePub)–ISBN978-1-118-65618-1 (cloth)1.Seasquirts–Anatomy.2.Seasquirts–Development.I.Title. QL613 596(cid:2).2–dc23 2013038006 PrintedinSingapore 10987654321 To all who have contributed to the developmental biology of ascidians CONTENTS PREFACE ix CHAPTER1 ABRIEFINTRODUCTIONTOASCIDIANS 1 CHAPTER2 THEDEVELOPMENTOFTADPOLELARVAEANDSESSILEJUVENILES 9 CHAPTER3 GENOMICS,TRANSCRIPTOMICS,ANDPROTEOMICS 19 CHAPTER4 RESEARCHTOOLS 31 CHAPTER5 THEFUNCTIONANDREGULATIONOFMATERNALTRANSCRIPTS 41 CHAPTER6 LARVALTAILMUSCLE 53 CHAPTER7 ENDODERM 63 CHAPTER8 EPIDERMIS 69 CHAPTER9 NOTOCHORD 77 CHAPTER10 THELARVALANDADULTNERVOUSSYSTEMS 89 CHAPTER11 MESENCHYME 107 CHAPTER12 MAKINGBLUEPRINTOFCHORDATEBODY:DYNAMICACTIVITIES OFREGULATORYGENES 113 CHAPTER13 DEVELOPMENTOFTHEJUVENILEHEART 137 CHAPTER14 GERM-CELLLINE,GAMETES,FERTILIZATION,AND METAMORPHOSIS 145 CHAPTER15 INNATEIMMUNESYSTEMANDBLOODCELLS 159 CHAPTER16 COLONIALASCIDIANS:ASEXUALREPRODUCTIONANDCOLONY SPECIFICITY 167 CHAPTER17 EVOLUTIONARYDEVELOPMENTALGENOMICS 175 INDEX 193 vii

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