Biogeochemical Cycles: Ecological Drivers and Environmental Impact (Geophysical Monograph Series)

317 Pages·2020·13.146 MB·English

by  Katerina Dontsova (editor), Zsuzsanna Balogh-Brunstad (editor), Gaël Le Roux (editor)

Geophysical Monograph Series
Geophysical Monograph Series
200 Lagrangian Modeling of the Atmosphere John Lin (Ed.) 225 Active Global Seismology Ibrahim Cemen and Yucel Yilmaz
201 Modeling the Ionosphere‐Thermosphere Jospeh D. Huba, (Eds.)
Robert W. Schunk, and George V. Khazanov (Eds.) 226 Climate Extremes Simon Wang (Ed.)
202 The Mediterranean Sea: Temporal Variability and Spatial 227 Fault Zone Dynamic Processes Marion Thomas (Ed.)
Patterns Gian Luca Eusebi Borzelli, Miroslav Gacic, Piero 228 Flood Damage Survey and Assessment: New Insights from
Lionello, and Paola Malanotte‐Rizzoli (Eds.) Research and Practice Daniela Molinari, Scira Menoni, and
203 Future Earth – Advancing Civic Understanding of the Francesco Ballio (Eds.)
Anthropocene Diana Dalbotten, Gillian Roehrig, and 229 Water‐Energy‐Food Nexus – Principles and Practices P.
Patrick Hamilton (Eds.) Abdul Salam, Sangam Shrestha, Vishnu Prasad Pandey, and
204 The Galápagos: A Natural Laboratory for the Earth Anil K Anal (Eds.)
Sciences Karen S. Harpp, Eric Mittelstaedt, Noemi 230 Dawn–Dusk Asymmetries in Planetary Plasma
d’Ozouville, and David W. Graham (Eds.) Environments Stein Haaland, Andrei Rounov, and Colin
205 Modeling Atmospheric and Oceanic Flows: Insightsfrom Forsyth (Eds.)
Laboratory Experiments and Numerical Simulations 231 Bioenergy and Land Use Change Zhangcai Qin, Umakant
Thomas von Larcher and Paul D. Williams (Eds.) Mishra, and Astley Hastings (Eds.)
206 Remote Sensing of the Terrestrial Water Cycle Venkat 232 Microstructural Geochronology: Planetary Records Down
Lakshmi (Ed.) to Atom Scale Desmond Moser, Fernando Corfu, James
207 Magnetotails in the Solar System Andreas Keiling, Caitriona Darling, Steven Reddy, and Kimberly Tait (Eds.)
Jackman, and Peter Delamere (Eds.) 233 Global Flood Hazard: Applications in Modeling, Mapping
208 Hawaiian Volcanoes: From Source to Surface Rebecca Carey, and Forecasting Guy Schumann, Paul D. Bates, Giuseppe T.
Valerie Cayol, Michael Poland, and Dominique Weis (Eds.) Aronica, and Heiko Apel (Eds.)
209 Sea Ice: Physics, Mechanics, and Remote Sensing 234 Pre‐Earthquake Processes: A Multidisciplinary Approach to
Mohammed Shokr and Nirmal Sinha (Eds.) Earthquake Prediction Studies Dimitar Ouzounov, Sergey
210 Fluid Dynamics in Complex Fractured‐Porous Systems Pulinets, Katsumi Hattori, and Patrick Taylor (Eds.)
Boris Faybishenko, Sally M. Benson, and John E. Gale (Eds.) 235 Electric Currents in Geospace and Beyond Andreas Keiling,
211 Subduction Dynamics: From Mantle Flow to Mega Octav Marghitu, and Michael Wheatland (Eds.)
Disasters Gabriele Morra, David A. Yuen, Scott King, Sang 236 Quantifying Uncertainty in Subsurface Systems Celine
Mook Lee, and Seth Stein (Eds.) Scheidt, Lewis Li, and Jef Caers (Eds.)
212 The Early Earth: Accretion and Differentiation James Badro 237 Petroleum Engineering Moshood Sanni (Ed.)
and Michael Walter (Eds.) 238 Geological Carbon Storage: Subsurface Seals and Caprock
213 Global Vegetation Dynamics: Concepts and Applications in Integrity Stephanie Vialle, Jonathan Ajo‐Franklin, and J.
the MC1 Model Dominique Bachelet and David Turner (Eds.) William Carey (Eds.)
214 Extreme Events: Observations, Modeling and Economics Mario 239 Lithospheric Discontinuities Huaiyu Yuan and Barbara
Chavez, Michael Ghil, and Jaime Urrutia‐Fucugauchi (Eds.) Romanowicz (Eds.)
215 Auroral Dynamics and Space Weather Yongliang Zhang 240 Chemostratigraphy Across Major Chronological Eras
and Larry Paxton (Eds.) Alcides N.Sial, Claudio Gaucher, Muthuvairavasamy
216 Low‐Frequency Waves in Space Plasmas Andreas Keiling, Ramkumar, and Valderez Pinto Ferreira (Eds.)
Dong‐Hun Lee, and Valery Nakariakov (Eds.) 241 Mathematical Geoenergy:Discovery, Depletion, and Renewal
217 Deep Earth: Physics and Chemistry of the Lower Mantle Paul Pukite, Dennis Coyne, and Daniel Challou (Eds.)
and Core Hidenori Terasaki and Rebecca A. Fischer (Eds.) 242 Ore Deposits: Origin, Exploration, and Exploitation Sophie
218 Integrated Imaging of the Earth: Theory and Applications Decree and Laurence Robb (Eds.)
Max Moorkamp, Peter G. Lelievre, Niklas Linde, and Amir 243 Kuroshio Current: Physical, Biogeochemical and Ecosystem
Khan (Eds.) Dynamics Takeyoshi Nagai, Hiroaki Saito, Koji Suzuki, and
219 Plate Boundaries and Natural Hazards Joao Duarte and Motomitsu Takahashi (Eds.)
Wouter Schellart (Eds.) 244 Geomagnetically Induced Currents from the Sun to the
220 Ionospheric Space Weather: Longitude and Hemispheric Power Grid Jennifer L. Gannon, Andrei Swidinsky, and
Dependences and Lower Atmosphere Forcing Timothy Zhonghua Xu (Eds.)
Fuller‐Rowell, Endawoke Yizengaw, Patricia H. Doherty, 245 Shale: Subsurface Science and Engineering Thomas
and Sunanda Basu (Eds.) Dewers, Jason Heath, and Marcelo Sánchez (Eds.)
221 Terrestrial Water Cycle and Climate Change Natural 246 Submarine Landslides: Subaqueous Mass Transport
and Human‐Induced Impacts Qiuhong Tang and Deposits From Outcrops to Seismic Profiles Kei Ogata,
Taikan Oki (Eds.) Andrea Festa, and Gian Andrea Pini (Eds.)
222 Magnetosphere‐Ionosphere Coupling in the Solar System 247 Iceland: Tectonics, Volcanics, and Glacial Features Tamie J.
Charles R. Chappell, Robert W. Schunk, Peter M. Banks, Jovanelly
James L. Burch, and Richard M. Thorne (Eds.) 248 Dayside Magnetosphere Interactions Quigang Zong, Philippe
223 Natural Hazard Uncertainty Assessment: Modeling and Escoubet, David Sibeck, Guan Le, and Hui Zhang (Eds.)
Decision Support Karin Riley, Peter Webley, and Matthew 249 Carbon in Earth’s Interior Craig E. Manning, Jung‐Fu Lin, and
Thompson (Eds.) Wendy L. Mao (Eds.)
224 Hydrodynamics of Time‐Periodic Groundwater Flow: 250 Nitrogen Overload: Environmental Degradation,
Diffusion Waves in Porous Media Joe S. Depner and Todd Ramifications, and Economic Costs Brian G. Katz
C. Rasmussen (Auth.)
Geophysical Monograph 251
Biogeochemical Cycles
Ecological Drivers and Environmental
Impact
Katerina Dontsova
Zsuzsanna Balogh‐Brunstad
Gaël Le Roux
Editors
This Work is a co‐publication of the American Geophysical Union and John Wiley and Sons, Inc.
This Work is a co‐publication between the American Geophysical Union and John Wiley & Sons, Inc.
This edition first published 2020 by John Wiley & Sons, Inc., 111 River Street, Hoboken, NJ 07030, USA and the American
Geophysical Union, 2000 Florida Avenue, N.W., Washington, D.C. 20009
© 2020 American Geophysical Union
All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted, in any form or by
any means, electronic, mechanical, photocopying, recording, or otherwise, except as permitted by law. Advice on how to obtain
permission to reuse material from this title is available at http://www.wiley.com/go/permissions
Published under the aegis of the AGU Publications Committee
Brooks Hanson, Executive Vice President, Science
Carol Frost, Chair, Publications Committee
For details about the American Geophysical Union visit us at www.agu.org.
Wiley Global Headquarters
111 River Street, Hoboken, NJ 07030, USA
For details of our global editorial offices, customer services, and more information about
Wiley products visit us at www.wiley.com.
Limit of Liability/Disclaimer of Warranty
While the publisher and authors have used their best efforts in preparing this work, they make no representations or warranties
with respect to the accuracy or completeness of the contents of this work and specifically disclaim all warranties, including
without limitation any implied warranties of merchantability or fitness for a particular purpose. No warranty may be created or
extended by sales representatives, written sales materials, or promotional statements for this work. The fact that an organization,
website, or product is referred to in this work as a citation and/or potential source of further information does not mean that the
publisher and authors endorse the information or services the organization, website, or product may provide or recommendations
it may make. This work is sold with the understanding that the publisher is not engaged in rendering professional services. The
advice and strategies contained herein may not be suitable for your situation. You should consult with a specialist where
appropriate. Neither the publisher nor authors shall be liable for any loss of profit or any other commercial damages, including
but not limited to special, incidental, consequential, or other damages. Further, readers should be aware that websites listed in
this work may have changed or disappeared between when this work was written and when it is read.
Library of Congress Cataloging‐in‐Publication data is available.
Hardback: 9781119413301
Cover Design: Wiley
Cover Image: © Zsuzsanna Balogh-Brunstad
Set in 10/12pt Times New Roman by SPi Global, Pondicherry, India
Printed in the United States of America
10 9 8 7 6 5 4 3 2 1
0004536599.INDD 4 3/10/2020 10:54:35 AM
CONTENTS
Contributors .........................................................................................................................................................vii
Preface ..................................................................................................................................................................xi
Acknowledgments ...............................................................................................................................................xiii
Part I: Biological Weathering
1. Biological Weathering in the Terrestrial System: An Evolutionary Perspective
Dragos G. Zaharescu, Carmen I. Burghelea, Katerina Dontsova, Christopher T. Reinhard,
Jon Chorover, and Rebecca Lybrand ..............................................................................................................3
2. Plants as Drivers of Rock Weathering
Katerina Dontsova, Zsuzsanna Balogh‐Brunstad, and Jon Chorover ..............................................................33
3. Microbial Weathering of Minerals and Rocks in Natural Environments
Toby Samuels, Casey Bryce, Hanna Landenmark, Claire Marie-Loudon, Natasha Nicholson,
Adam H. Stevens, and Charles Cockell .........................................................................................................59
4. Micro‐ and Nanoscale Techniques to Explore Bacteria and Fungi Interactions with Silicate Minerals
Zsuzsanna Balogh‐Brunstad, Kyle Smart, Alice Dohnalkova, Loredana Saccone, and Mark M. Smits .............81
5. Modeling Microbial Dynamics and Heterotrophic Soil Respiration: Effect of Climate Change
Elsa Abs and Régis Ferrière .........................................................................................................................103
Part II: Elemental Cycles
6. Critical Zone Biogeochemistry: Linking Structure and Function
Bryan Moravec and Jon Chorover ...............................................................................................................133
7. Tracking the Fate of Plagioclase Weathering Products: Pedogenic and Human Influences
Scott W. Bailey ............................................................................................................................................151
8. Small Catchment Scale Molybdenum Isotope Balance and its Implications for Global
Molybdenum Isotope Cycling
Thomas Nägler, Marie‐Claire Pierret, Andrea Voegelin, Thomas Pettke,
Lucas Aschwanden, and Igor Villa ...............................................................................................................163
9. Trace Metal Legacy in Mountain Environments: A View from the Pyrenees Mountains
Gaël Le Roux, Sophia V. Hansson, Adrien Claustres, Stéphane Binet, François De Vleeschouwer,
Laure Gandois, Florence Mazier, Anaelle Simonneau, Roman Teisserenc, Deonie Allen,
Thomas Rosset, Marilen Haver, Luca Da Ros, Didier Galop, Pilar Durantez, Anne Probst,
Jose Miguel Sánchez-Pérez, Sabine Sauvage, Pascal Laffaille, Séverine Jean, Dirk S. Schmeller,
Lluis Camarero, Laurent Marquer, and Stephen Lofts ...................................................................................191
10. Poised to Hindcast and Earthcast the Effect of Climate on the Critical Zone: Shale Hills as a Model
Pamela L. Sullivan, Li Li, Yves Goddéris, and Susan L. Brantley .....................................................................207
v
vi CONTENTS
Part III: Frontier and Managed Ecosystems
11. Importance of the Collection of Abundant Ground‐Truth Data for Accurate Detection of Spatial
and Temporal Variability of Vegetation by Satellite Remote Sensing
Shin Nagai, Kenlo Nishida Nasahara, Tomoko Kawaguchi Akitsu, Taku M. Saitoh,
and Hiroyuki Muraoka ...............................................................................................................................225
12. Biogeochemical Cycling of Redox‐Sensitive Elements in Permafrost‐Affected Ecosystems
Elizabeth Herndon, Lauren Kinsman‐Costello, and Sarah Godsey ................................................................245
13. Anthropogenic Interactions with Rock Varnish
Ronald I. Dorn ............................................................................................................................................267
14. Cycling of Natural Sources of Phosphorus and Potassium for Environmental Sustainability
Biraj B. Basak, Ashis Maity, and Dipak R. Biswas .........................................................................................285
15. Ecological Drivers and Environmental Impacts of Biogeochemical Cycles:
Challenges and Opportunities
Katerina Dontsova, Zsuzsanna Balogh‐Brunstad, and Gaël Le Roux ............................................................301
Index ..................................................................................................................................................................307
CONTRIBUTORS
Elsa Abs Casey Bryce
Ecology and Evolutionary Biology, University of Geomicrobiology Group, Centre for Applied
Arizona, Tucson, Arizona, USA; and Institute of Biology Geoscience, University of Tübingen,
of Ecole Normale Superieure (IBENS), National Center Tübingen, Germany
for Scientific Research (CNRS), INSERM, PSL University,
Paris, France Carmen I. Burghelea
Biosphere 2, University of Arizona, Tucson,
Deonie Allen Arizona, USA
Laboratory of Functional Ecology and Environment,
University of Toulouse, CNRS, INPT, UPS, Lluis Camarero
Toulouse, France Center for Advanced Studies of Blanes, CSIC, Blanes,
Girona, Spain
Tomoko Kawaguchi Akitsu
Faculty of Life and Environmental Sciences, University Jon Chorover
of Tsukuba, Tennodai, Tsukuba, Ibaraki, Japan Department of Environmental Science, University of
Arizona, Tucson, Arizona, USA
Lucas Aschwanden
Institute of Geological Sciences, University of Bern, Adrien Claustres
Bern, Switzerland Laboratory of Functional Ecology and Environment,
University of Toulouse, CNRS, INPT, UPS, Toulouse,
Scott W. Bailey France
US Forest Service, Northern Research Station, North
Woodstock, New Hampshire, USA Charles Cockell
UK Centre for Astrobiology, School of Physics and
Zsuzsanna Balogh‐Brunstad Astronomy, University of Edinburgh, Edinburgh, UK
Department of Geology and Environmental Sciences,
Hartwick College, Oneonta, New York, USA Luca Da Ros
Laboratory of Functional Ecology and Environment,
Biraj B. Basak University of Toulouse, CNRS, INPT, UPS, Toulouse,
ICAR‐Directorate of Medicinal and Aromatic Plants France
Research (DMAPR), Anand, India
François De Vleeschouwer
Stéphane Binet Laboratory of Functional Ecology and Environment,
Laboratory of Functional Ecology and Environment, University of Toulouse, CNRS, INPT, UPS, Toulouse,
University of Toulouse, CNRS, INPT, UPS, Toulouse, France; and Franco-Argentine Institute for the Study of
France; and Institute of Earth Sciences, ISTO, University Climate and its Impacts, University of Buenos Aires,
of Orléans, BRGM, Orléans, France Argentina
Dipak R. Biswas Alice Dohnalkova
Division of Soil Science and Agricultural Chemistry, Environmental Molecular Sciences Laboratory,
Indian Agricultural Research Institute (IARI), New Pacific Northwest National Laboratory, Richland,
Delhi, India Washington, USA
Susan L. Brantley Katerina Dontsova
Earth and Environmental Systems Institute and Department of Environmental Science, and
Department of Geosciences, Pennsylvania State Biosphere 2, University of Arizona, Tucson,
University, University Park, Pennsylvania, USA Arizona, USA
vii
viii CONTRIBUTORS
Ronald I. Dorn Séverine Jean
School of Geographical Sciences and Urban Laboratory of Functional Ecology and Environment,
Planning, Arizona State University, Tempe, University of Toulouse, CNRS, INPT, UPS, Toulouse,
Arizona, USA France
Pilar Durantez Lauren Kinsman‐Costello
Laboratory of Functional Ecology and Environment, Department of Biological Sciences, Kent State
University of Toulouse, CNRS, INPT, UPS, Toulouse, University, Kent, Ohio, USA
France
Pascal Laffaille
Régis Ferrière Laboratory of Functional Ecology and Environment,
Ecology and Evolutionary Biology, University of University of Toulouse, CNRS, INPT, UPS, Toulouse,
Arizona, Tucson, Arizona, USA; and Institute of France
Biology of Ecole Normale Superieure (IBENS), National
Center for Scientific Research (CNRS), INSERM, PSL Hanna Landenmark
University, Paris, France; and International Center for UK Centre for Astrobiology, School of Physics and
Interdisciplinary and Global Environmental Studies Astronomy, University of Edinburgh, Edinburgh, UK
(iGLOBES), CNRS, ENS, University of Arizona, Tucson,
Gaël Le Roux
Arizona, USA
Laboratory of Functional Ecology and Environment,
University of Toulouse, CNRS, INPT, UPS, Toulouse,
Didier Galop
France
GEODE, Geography of the Environment, University of
Jean‐Jaurès Toulouse, France, and LabEx DRIIHM
Li Li
(ANR-11-LABX-0010), INEE-CNRS,Paris, France
Department of Civil and Environmental Engineering,
Pennsylvania State University, University Park,
Laure Gandois
Pennsylvania, USA
Laboratory of Functional Ecology and Environment,
University of Toulouse, CNRS, INPT, UPS, Toulouse,
Stephen Lofts
France
Centre for Ecology and Hydrology, Lancaster University,
Lancaster, UK
Yves Goddéris
Environmental Geosciences Toulouse, CNRS—
Claire Marie-Loudon
Midi-Pyrénées Observatory, Toulouse, France
UK Centre for Astrobiology, School of Physics and
Astronomy, University of Edinburgh, Edinburgh, UK
Sarah Godsey
Department of Geosciences, Idaho State University,
Rebecca Lybrand
Pocatello, Idaho, USA
Oregon State University, Corvallis, Oregon, USA
Sophia V. Hansson
Ashis Maity
Laboratory of Functional Ecology and Environment,
ICAR‐National Research Center for Pomegranate,
University of Toulouse, CNRS, INPT, UPS, Toulouse,
Solapur, India
France; and Department of Bioscience – Arctic
Research Centre, Aarhus University, Aarhus, Denmark Laurent Marquer
Laboratory of Functional Ecology and Environment,
Marilen Haver University of Toulouse, CNRS, INPT, UPS,
Laboratory of Functional Ecology and Environment, Toulouse, France; and GEODE, Geography of the
University of Toulouse, CNRS, INPT, UPS, Toulouse, Environment, CNRS, University of Jean‐Jaurès
France Toulouse, France
Elizabeth Herndon Florence Mazier
Department of Geology, Kent State University, Kent, GEODE, Geography of the Environment, University of
Ohio, USA Jean‐Jaurès Toulouse, France
CONTRIBUTORS ix
Bryan Moravec Thomas Rosset
Department of Environmental Science, University of Laboratory of Functional Ecology and Environment,
Arizona, Tucson, Arizona, USA University of Toulouse, CNRS, INPT, UPS, Toulouse,
France
Hiroyuki Muraoka
River Basin Research Center, Gifu University, Yanagido, Loredana Saccone
Gifu, Japan Department of Architecture and Civil Engineering,
University of Bath, Bath, UK
Shin Nagai
Research Institute for Global Change, Japan Agency for
Taku M. Saitoh
Marine‐Earth Science and Technology, Showamachi,
River Basin Research Center, Gifu University, Yanagido,
Kanazawa‐ku, Yokohama, Kanagawa, Japan; and
Gifu, Japan
Institute of Arctic Climate and Environment Research,
Japan Agency for Marine‐Earth Science and Technology,
Toby Samuels
Showamachi, Kanazawa‐ku, Yokohama, Kanagawa,
UK Centre for Astrobiology, School of Physics and
Japan
Astronomy, University of Edinburgh, Edinburgh,
UK; and Institute of Evolutionary Biology, School
Thomas Nägler
of Biological Sciences, University of Edinburgh,
Institute of Geological Sciences, University of Bern,
Edinburgh, UK
Bern, Switzerland
Sabine Sauvage
Kenlo Nishida Nasahara
Laboratory of Functional Ecology and Environment,
Faculty of Life and Environmental Sciences, University
University of Toulouse, CNRS, INPT, UPS, Toulouse,
of Tsukuba, Tennodai, Tsukuba, Ibaraki, Japan
France
Natasha Nicholson
UK Centre for Astrobiology, School of Physics Dirk S. Schmeller
and Astronomy, University of Edinburgh, Laboratory of Functional Ecology and Environment,
Edinburgh, UK University of Toulouse, CNRS, INPT, UPS, Toulouse,
France
Jose Miguel Sánchez-Pérez
Anaelle Simonneau
Laboratory of Functional Ecology and Environment,
Institute of Earth Sciences, ISTO, University of Orléans,
University of Toulouse, CNRS, INPT, UPS, Toulouse,
BRGM, Orléans, France
France
Thomas Pettke Kyle Smart
Institute of Geological Sciences, University of Bern, Department of Geology and Environmental Sciences,
Bern, Switzerland Hartwick College, Oneonta, New York, USA
Marie‐Claire Pierret Mark M. Smits
Laboratory of Hydrology and Geochemistry of Applied Biology, HAS University of Applied Sciences,
Strasbourg, EOST, Strasbourg University, CNRS, Hertogenbosch, the Netherlands
Strasbourg, France
Adam H. Stevens
Anne Probst UK Centre for Astrobiology, School of Physics
Laboratory of Functional Ecology and Environment, and Astronomy, University of Edinburgh,
University of Toulouse, CNRS, INPT, UPS, Toulouse, Edinburgh, UK
France
Pamela L. Sullivan
Christopher T. Reinhard College of Earth, Ocean, and Atmospheric
School of Earth and Atmospheric Sciences, Georgia Science, Oregon State University, Corvallis,
Institute of Technology, Atlanta, Georgia, USA Oregon, USA